Isolate species/subgroups | Target gene | Primer | Nucleotide Sequence (5'- 3') | Amplicon size (bp) | Reference |
---|---|---|---|---|---|
E. coli | |||||
EPEC and EHEC | eaeA | EAE-a | ATGCTTAGTGCTGGTTTAGG | 248 | [63] |
 |  | EAE-b | GCCTTCATCATTTCGCTTTC |  |  |
EHEC | stx 1 | JMS1-F | GTCACAGTAACAAACCGTAACA | 95 | [64] |
 |  | JMS1-R | TCGTTGACTACTTCTTATCTGGA |  |  |
ETEC | LT | LT-1 | AGCAGGTTTCCCACCGGATCACCA | 132 | [65] |
 | ST | LT-2 | GTGCTCAGATTCTGGGTCTC | 190 | [66] |
 |  | STa-F | GCTAATGTTGGCAATTTTTATTTCTGTA |  |  |
 |  | STa-R | AGGATTACAACAAAGTTCACAGCAGTAA |  |  |
EAEC | aggR | AggRks1 | GTATACACAAAAGAAGGAAGC | 254 | [67] |
 | astA | aggRkas2 | ACAGAATCGTCAGCATCAGC | 106 | [68] |
 |  | EAST-1S | GCCATCAACACAGTATATCC |  |  |
 |  | EAST-1AS | GAGTGACGGCTTTGTAGTCC |  |  |
EIEC | VirA | virA-F | CTGCATTCTGGCAATCTCTTCACA | 215 | [69] |
 |  | virA-R | TGATGAGCTAACTTCGTAAGCCCTCC |  |  |
Salmonella | |||||
 | invA | invA 139 | GTGAAATTATCGCCACGTTCGGGCAA | 284 | [70] |
 |  | invA 141 | TCATCGCACCGTCAAAGGAACC |  |  |
 | sefA | S1 | GCC GTA CAC GAG CTT ATA GA | 250 | [71] |
 |  | S4 | ACC TAC AGG GGC ACA ATA AC |  |  |
 | fliC | Fli15 | CGG TGT TGC CCA GGT TGG TAA T | 620 | [72] |
 |  | Typ04 | ACT GGT AAA GAT GGC T |  |  |