Skip to main content

Table 3 Virulence genes, primers and DNA target sequence sizes (amplicons) of multiplex PCRs

From: Mucosa-associated but not luminal Escherichia coli is augmented in Crohn’s disease and ulcerative colitis

Gene

Primers (5- 3>)

Amplicon (bp)

References

stx

F- GAGCGAAATAATTTATATGTG

518

[17]

R- TGATGATGGCAATTCAGTAT

eae

F- CCCGAATTCGGCACAAGCATAAGC

881

[17]

R- CCCGGATCCGTCTCGCCAGTATTCG

sigA

F- CCGACTTCTCACTTTCTCCCG

430

[20]

R- CCATCCAGCTGCATAGTGTTTG

sepA

F- GCAGTGGAAATATGATGCGGC

794

[20]

R- TTGTTCAGATCGGAGAAGAACG

pic

F- ACTGGATCTTAAGGCTCAGGAT

572

[20]

R- GACTTAATGTCACTGTTCAGCG

aggR

F- GTATACACAAAAGAAGGAAGC

254

[17]

R- ACAGAATCGTCAGCATCAGC

ipaH

F- GTTCCTTGACCGCCTTTCCGATACCGTC

619

[17]

R- GCCGGTCAGCCACCCTCTGAGAGTAC

elt

F- TCTCTATGTGCATACGGAGC

322

[17]

R- CCATACTGATTGCCGCAAT

pet

F- GGCACAGAATAAAGGGGTGTTT

302

[20]

R- CCTCTTGTTTCCACGACATAC

sat

F-TCAGAAGCTCAGCGAATCATTG

930

[20]

R-CCATTATCACCAGTAAAACGCACC