Table 1 Type of base modifications and associated motifs detected
From: Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives
Motif | Modification type | # of motifs detected | ||
|---|---|---|---|---|
UM032 | 298 | 299 | ||
GA NTC | m6A | 5,393 | 5,428 | 5,397 |
CCA TC | m6A | 2,257 | 2,261 | 2,258 |
GA GG | m6A | 4,585 | 4,598 | 4,580 |
TCNGA | m6A | 2,531 | 2,544 | 2,534 |
GA TC | m6A | 10,195 | 10,210 | 10,175 |
C CGG | m4C | 3,414 | 3,424 | 3,420 |
TGCA | m6A | 11,221 | 11,199 | 11,185 |
CYA NNNNNNNTRG | m6A | 2,303 | 2,319 | 2,305 |
ATTAA T | m6A | 865 | 865 | 865 |
AC NGT | m4C | 1,077 | 1,056 | 1,056 |
CA TG | m6A | 13,446 | 13,339 | 13,361 |
GAAA G | Unknown | 4,332 | 4,839 | 4,851 |
Others | 59,182 | 43,338 | 36,469 | |
Total | 120,801 | 105,420 | 98,456 | |