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Table 1 Type of base modifications and associated motifs detected

From: Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives

Motif Modification type   # of motifs detected  
   UM032 298 299
GA NTC m6A 5,393 5,428 5,397
CCA TC m6A 2,257 2,261 2,258
GA GG m6A 4,585 4,598 4,580
TCNGA m6A 2,531 2,544 2,534
GA TC m6A 10,195 10,210 10,175
C CGG m4C 3,414 3,424 3,420
TGCA m6A 11,221 11,199 11,185
CYA NNNNNNNTRG m6A 2,303 2,319 2,305
ATTAA T m6A 865 865 865
AC NGT m4C 1,077 1,056 1,056
CA TG m6A 13,446 13,339 13,361
GAAA G Unknown 4,332 4,839 4,851
Others   59,182 43,338 36,469
Total   120,801 105,420 98,456