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Table 3 Bacterial strains for in silico specificity screen of primers and probes

From: Detection, identification and quantification of Campylobacter jejuni, coli and lari in food matrices all at once using multiplex qPCR

Bacterial strain NCBI genome accession number
Campylobacter jejuni 81 - 176 NC_008787.1
Campylobacter jejuni 81116 NC_009839.1
Campylobacter jejuni NCTC 11168 NC_002163.1
Campylobacter coli JV20 AEER01000001.1
Campylobacter lari RM2100 NC_012039.1
Campylobacter concisus 13826 NC_009802.1
Campylobacter curvus 525.92 NC_009715.1
Campylobacter fetus subsp. fetus 82-40 NC_008599.1
Campylobacter hominis ATCC BAA-381 NC_009714.1
Arcobacter butzleri RM4018 NC_009850.1
Arcobacter nitrofigilis DSM 7299 NC_014166.1
Bacillus cereus ATCC 10987 NC_003909.8
Bacillus subtilis subsp. subtilis str. 168 NC_000964.3
Cronobacter sakazakii ATCC BAA-894 NC_009778.1
Enterobacter aerogenes KCTC 2190 NC_015663.1
Enterobacter cloacae subsp. cloacae ATCC 13047 NC_014121.1
Escherichia coli ATCC 8739 CP000946.1
Escherichia coli BW2952 NC_012759.1
Helicobacter pylori 26695 NC_000915.1
Listeria monocytogenes 08-5578 NC_013766.1
Listeria monocytogenes EGD-e NC_003210.1
Pseudomonas aeruginosa UCBPP-PA14 NC_008463.1
Salmonella bongori NCTC 12419 NC_015761.1
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NC_003197.1
Shigella boydii CDC 3083-94 NC_010658.1
Shigella dysenteriae Sd197 NC_007606.1
Shigella flexneri 2002017 CP001383.1
Shigella sonnei Ss046 NC_007384.1
Staphylococcus aureus subsp. aureus NCTC 8325 NC_007795.1
Yersinia enterocolitica subsp. enterocolitica 8081 NC_008800.1