Table 3 Bacterial strains for in silico specificity screen of primers and probes
Bacterial strain | NCBI genome accession number |
|---|---|
Campylobacter jejuni 81 - 176 | NC_008787.1 |
Campylobacter jejuni 81116 | NC_009839.1 |
Campylobacter jejuni NCTC 11168 | NC_002163.1 |
Campylobacter coli JV20 | AEER01000001.1 |
Campylobacter lari RM2100 | NC_012039.1 |
Campylobacter concisus 13826 | NC_009802.1 |
Campylobacter curvus 525.92 | NC_009715.1 |
Campylobacter fetus subsp. fetus 82-40 | NC_008599.1 |
Campylobacter hominis ATCC BAA-381 | NC_009714.1 |
Arcobacter butzleri RM4018 | NC_009850.1 |
Arcobacter nitrofigilis DSM 7299 | NC_014166.1 |
Bacillus cereus ATCC 10987 | NC_003909.8 |
Bacillus subtilis subsp. subtilis str. 168 | NC_000964.3 |
Cronobacter sakazakii ATCC BAA-894 | NC_009778.1 |
Enterobacter aerogenes KCTC 2190 | NC_015663.1 |
Enterobacter cloacae subsp. cloacae ATCC 13047 | NC_014121.1 |
Escherichia coli ATCC 8739 | CP000946.1 |
Escherichia coli BW2952 | NC_012759.1 |
Helicobacter pylori 26695 | NC_000915.1 |
Listeria monocytogenes 08-5578 | NC_013766.1 |
Listeria monocytogenes EGD-e | NC_003210.1 |
Pseudomonas aeruginosa UCBPP-PA14 | NC_008463.1 |
Salmonella bongori NCTC 12419 | NC_015761.1 |
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | NC_003197.1 |
Shigella boydii CDC 3083-94 | NC_010658.1 |
Shigella dysenteriae Sd197 | NC_007606.1 |
Shigella flexneri 2002017 | CP001383.1 |
Shigella sonnei Ss046 | NC_007384.1 |
Staphylococcus aureus subsp. aureus NCTC 8325 | NC_007795.1 |
Yersinia enterocolitica subsp. enterocolitica 8081 | NC_008800.1 |