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Table 1 Six ATCC26695 sequence data sets

From: Whole-genome sequencing of clarithromycin resistant Helicobacter pylori characterizes unidentified variants of multidrug resistant efflux pump genes

Sample ID

Total reads (before trimming)

Total reads (after trimming)

Total consensus length (bp)

Total consensus coverage (%)

Average coverage (fold)

Assemble gaps (bp)

NCBI accession number

1

110,650

109,952

1,457,400

87.38

4.2

210,467

NA

2

130,226

130,216

1,649,483

98.89

5.9

18,384

NA

3

488,824

488,724

1,667,405

99.97

29.5

462

NA

4

664,278

642,532

1,667,519

99.97

36.3

348

NA

5

1,211,740

1,195,756

1,667,544

99.98

71.8

323

NA

6

2,148,576

2,107,718

1,667,758

99.99

81.7

211

DRS013117

  1. Total reads after trimming are mapped to the reference nucleotides of 1,667,867 bp (NC_000915) and calculated with Genomic Workbench 6.0.1. NA; not available.