Skip to main content

Table 1 Six ATCC26695 sequence data sets

From: Whole-genome sequencing of clarithromycin resistant Helicobacter pylori characterizes unidentified variants of multidrug resistant efflux pump genes

Sample ID Total reads (before trimming) Total reads (after trimming) Total consensus length (bp) Total consensus coverage (%) Average coverage (fold) Assemble gaps (bp) NCBI accession number
1 110,650 109,952 1,457,400 87.38 4.2 210,467 NA
2 130,226 130,216 1,649,483 98.89 5.9 18,384 NA
3 488,824 488,724 1,667,405 99.97 29.5 462 NA
4 664,278 642,532 1,667,519 99.97 36.3 348 NA
5 1,211,740 1,195,756 1,667,544 99.98 71.8 323 NA
6 2,148,576 2,107,718 1,667,758 99.99 81.7 211 DRS013117
  1. Total reads after trimming are mapped to the reference nucleotides of 1,667,867 bp (NC_000915) and calculated with Genomic Workbench 6.0.1. NA; not available.