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Table 3 SNVs of ATCC26695 sequence data from sample 6

From: Whole-genome sequencing of clarithromycin resistant Helicobacter pylori characterizes unidentified variants of multidrug resistant efflux pump genes

 

Nucleotide position (NC_000915)

Reference nucleotide (NC_000915)

Mutated nucleotide

Total reads

Reads of mutated nucleotide

Frequency of mutated nucleotide (%)

Annotations

1

130106

T

C

217

117

53.9

Gene: HP0119

2

130111

T

G

186

94

50.5

Gene: HP0119

3

301322

G

T

109

108

99.0

Gene: HP0289

4

1370263

G

C

101

99

98.0

Gene: rpmJ

5

1428910

C

A

137

104

75.9

Gene: HP1366

6

1502547

T

C

345

184

53.3

 

7

1502549

A

G

345

184

53.3

 
  1. Total reads and mutated reads indicate the number of reads that passed quality control.