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Table 4 Whole-genome sequencing of 19 clinical H. pylori isolates

From: Whole-genome sequencing of clarithromycin resistant Helicobacter pylori characterizes unidentified variants of multidrug resistant efflux pump genes

Strain Total reads (before trimming) Total reads (after trimming) Total consensus length (bp) Total consensus coverage (%) Average coverage (fold) NCBI accession number
CLR-susceptible      
177 2,619,844 2,563,352 1,666,155 99.89 116.3 DRS013118
179 2,291,578 2,269,154 1,560,395 93.55 131.8 DRS013119
189 2,010,838 1,967,720 1,664,913 99.82 90.9 DRS013120
F32 5,383,222 5,327,650 1,593,944 95.56 283.6 DRS013121
F44 3,887,082 3,806,902 1,667,084 99.95 157.9 DRS013122
F65 4,248,748 4,157,272 1,667,173 99.95 189.6 DRS013123
F79 3,036,516 3,035,946 1,562,308 93.67 190.1 DRS013124
CLR-resistant      
S1 2,271,944 2,271,890 1,571,448 94.21 149.2 DRS013125
S2 5,962,628 5,962,428 1,587,965 95.20 342.2 DRS013126
S4 4,640,490 4,640,330 1,578,524 94.64 262.8 DRS013127
S8 10,869,516 10,868,918 1,610,753 96.57 686.3 DRS013128
S13 3,873,394 3,873,000 1,563,976 93.77 264.2 DRS013129
S16 6,782,392 6,781,628 1,594,857 95.62 448.2 DRS013130
S17 5,700,038 5,699,336 1,596,480 95.71 327.3 DRS013131
S22 6,597,254 6,596,450 1,598,844 95.86 426.8 DRS013132
S23 1,820,652 1,820,436 1,559,100 93.47 125.5 DRS013133
S26 6,692,038 6,691,390 1,584,702 95.01 442.9 DRS013134
174 3,004,008 3,003,900 1,580,603 94.76 169.7 DRS013135
194 6,936,714 6,921,552 1,600,238 95.94 415.2 DRS013136
  1. Total reads after trimming are mapped to the reference nucleotide of ATCC26695 and calculated with Genomic Workbench 6.0.1.