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Table 4 Whole-genome sequencing of 19 clinical H. pylori isolates

From: Whole-genome sequencing of clarithromycin resistant Helicobacter pylori characterizes unidentified variants of multidrug resistant efflux pump genes

Strain

Total reads (before trimming)

Total reads (after trimming)

Total consensus length (bp)

Total consensus coverage (%)

Average coverage (fold)

NCBI accession number

CLR-susceptible

     

177

2,619,844

2,563,352

1,666,155

99.89

116.3

DRS013118

179

2,291,578

2,269,154

1,560,395

93.55

131.8

DRS013119

189

2,010,838

1,967,720

1,664,913

99.82

90.9

DRS013120

F32

5,383,222

5,327,650

1,593,944

95.56

283.6

DRS013121

F44

3,887,082

3,806,902

1,667,084

99.95

157.9

DRS013122

F65

4,248,748

4,157,272

1,667,173

99.95

189.6

DRS013123

F79

3,036,516

3,035,946

1,562,308

93.67

190.1

DRS013124

CLR-resistant

     

S1

2,271,944

2,271,890

1,571,448

94.21

149.2

DRS013125

S2

5,962,628

5,962,428

1,587,965

95.20

342.2

DRS013126

S4

4,640,490

4,640,330

1,578,524

94.64

262.8

DRS013127

S8

10,869,516

10,868,918

1,610,753

96.57

686.3

DRS013128

S13

3,873,394

3,873,000

1,563,976

93.77

264.2

DRS013129

S16

6,782,392

6,781,628

1,594,857

95.62

448.2

DRS013130

S17

5,700,038

5,699,336

1,596,480

95.71

327.3

DRS013131

S22

6,597,254

6,596,450

1,598,844

95.86

426.8

DRS013132

S23

1,820,652

1,820,436

1,559,100

93.47

125.5

DRS013133

S26

6,692,038

6,691,390

1,584,702

95.01

442.9

DRS013134

174

3,004,008

3,003,900

1,580,603

94.76

169.7

DRS013135

194

6,936,714

6,921,552

1,600,238

95.94

415.2

DRS013136

  1. Total reads after trimming are mapped to the reference nucleotide of ATCC26695 and calculated with Genomic Workbench 6.0.1.