Table 1 SNPs identified in SXT MO10 and ICE Vch Ind4 compared with ICE E306
Gene | UniProt GI | Product | Amino acid positions | Synonymity | Amino acid (codon) | ||
|---|---|---|---|---|---|---|---|
ICEE306 | SXTMO10 | ICE Vch Ind4 | |||||
int | 21885342 | Integrase | 326 | syn | I(ATA) | I(ATT) | . |
398 | NON | T(ACC) | I(ATC) | I(ATC) | |||
rumB' | 21885341 | UV repair DNA polymerase | 104 | syn | T(ACT) | . | T(ACT) |
s009 | 21885337 | Unknown | 114 | NON | A(GCC) | G(GGC) | . |
floR | 21885343 | Florfenicol exporter | 230 | NON | L(CTC) | V(GTC) | . |
s031 | 21885325 | Unknown | 152 | NON | V(GTC) | F(TTC) | . |
s035 | 21885321 | Unknown | 398 | NON | W(TGG) | G(GGG) | . |
s037 | 21885319 | Unknown | 204 | NON | P(CCG) | R(CGG) | . |
s038 | 21885318 | Unknown | 26 | NON | K(AAG) | R(AGG) | . |
traD | 21885274 | Conjugative coupling factor | 430 | NON | D(GAC) | A(GCC) | . |
432 | syn | A(GCG) | A(GCC) | . | |||
456 | syn | V(GTG) | V(GTC) | . | |||
s053 | 21885310 | Unknown | 194 | syn | S(AGC) | S(AGT) | . |
traU | 21885267 | Sex pilus assembly | 321 | NON | P(CCC) | S(TCC) | S(TCC) |
s060 | 21885308 | Unknown | 194 | NON | P(CCG) | T(ACG) | . |
Unknown | 199 | NON | S(TCA) | T(ACA) | . | ||
setC | 21885287 | Transcriptional activator | 20 | NON | S(TCC) | Y(TAC) | . |
s083 | 21885291 | Unknown | 39 | NON | P(CCC) | R(CGC) | . |