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Table 2 Comparison of important genes encoding stress resistance proteins in P. pentosaceus LI05, P. pentosaceus ATCC 25745, P. pentosaceus SL4 and P. pentosaceus IE-3

From: Whole-genome sequence assembly of Pediococcus pentosaceus LI05 (CGMCC 7049) from the human gastrointestinal tract and comparative analysis with representative sequences from three food-borne strains

Characterization Locus_tag Size (bp) Product description Identity (BLASTx) Max. identity to proteins of other species (BLASTp) (%)
ATCC 25745 (%) SL4 (%) IE-3 (%)
Bile tolerance BB06_RS0100955 1,026 Choloylglycine hydrolase family protein 99.05 99.25 100 69.50
Acid tolerance BB06_RS0107040 1,518 F0F1 ATP synthase subunit alpha 99.74 99.60 95.39 92.46
BB06_RS0107025 420 F0F1 ATP synthase subunit epsilon 99.76 99.29 99.76 84.89
BB06_RS0107030 1,410 F0F1 ATP synthase subunit beta 99.86 99.86 100 96.16
BB06_RS0107035 921 F0F1 ATP synthase subunit gamma 99.89 99.78 99.89 87.95
BB06_RS0107050 522 F0F1 ATP synthase subunit B 99.81 99.81 100 90.53
BB06_RS0107055 213 F0F1 ATP synthase subunit C 100 100 100 87.14
BB06_RS0107060 717 F0F1 ATP synthase subunit A 100 99.86 99.86 96.22
Universal stress resistance BB06_RS0103670 453 Universal stress protein UspA 99.12 99.34 99.12 68.42
BB06_RS0106945 456 Universal stress protein UspA 100 100 100 90.67
BB06_RS0101810 474 Universal stress protein UspA 99.37 99.79 99.79 70.70
BB06_RS0100900 432 Universal stress protein UspA 99.54 99.07 99.77 99.30
BB06_RS0101815 450 Universal stress protein UspA 99.33 99.11 99.11 93.24
BB06_RS0102220 453 Universal stress protein UspA 99.78 99.78 100 91.21
Hyperosmotic and heat resistance BB06_RS0104860 594 GrpE protein 98.32 98.82 99.83 72.60
BB06_RS0104870 1,131 Molecular chaperone DnaJ 99.03 98.85 99.82 88.56
Environmental stress resistance BB06_RS0102555 1,620 Molecular chaperone GroEL 100 99.26 100 94.81
Oxidative stress resistance BB06_RS0105175 516 Methionine sulfoxide reductase A 99.22 99.22 99.61 81.87
Enterocin A resistance BB06_RS0101010 279 Enterocin A Immunity family protein 99.64 - 100 38.89
Arsenate resistance BB06_RS0105725 354 Arsenate reductase 99.15 98.87 100 83.76
  1. Note: “-”, not detected.