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Table 4 Genes and their encoded proteins detected in P. pentosaceus LI05 with sequence similarities of less than 50% with sequences from both P. pentosaceus ATCC 25745 and P. pentosaceus SL4

From: Whole-genome sequence assembly of Pediococcus pentosaceus LI05 (CGMCC 7049) from the human gastrointestinal tract and comparative analysis with representative sequences from three food-borne strains

Locus Size (bp) Predicted function Best BLASTp hit % Query cover % Amino acid identity
By BLASTp Accession no. Organism
BB06_RS0102945 1,110 Type I restriction endonuclease subunit S WP_000072560.1 Staphylococcus aureus 100 49.34
BB06_RS0102950 912 Integrase WP_006845852.1 Weissella koreensis 100 74.26
BB06_RS0102955 672 Type I restriction-modification system, specificity subunit S WP_003595917.1 Lactobacillus casei 100 54.71
BB06_RS0102980 936 Daunorubicin resistance ATP-binding protein DrrA YP_004841605.1 Lactobacillus sanfranciscensis TMW 1.1304 100 62.06
BB06_RS0102995 678 ThiJ/PfpI family protein WP_010770374.1 Enterococcus caccae 99 71.42
BB06_RS0103035 633 TraX family protein YP_006726711.1 Lactobacillus buchneri CD034 99 50.90
BB06_RS0103095 618 Transposase YP_005004471.1 Pediococcusclaussenii ATCC BAA-344 100 98.05
BB06_RS0103100 2,268 Daunorubicin resistance protein DrrC WP_003680292.1 Lactobacillus coryniformis 100 99.07
BB06_RS0103110 591 Integrase WP_004906016.1 Leuconostoc citreum 99 97.96
BB06_RS0103120 468 Ferritin-like DNA-binding protein BAN08201.1 Lactobacillus plantarum 2025 100 99.35
BB06_RS0103125 744 Glycosyltransferase family 2 WP_027822873.1 Lactobacillus plantarum 100 99.60
BB06_RS0103130 1,248 ABC transporter permease WP_027822874.1 Lactobacillus plantarum 100 99.76
BB06_RS0103135 672 TetR family transcriptional regulator WP_027822875.1 Lactobacillus plantarum 100 99.55
BB06_RS0103140 339 Transposase WP_015474731.1 Lactobacillus brevis 95 99.07
BB06_RS0103155 1,308 Excinuclease ABC subunit A WP_024862991.1 Pediococcus acidilactic i 99 72.51
BB06_RS0103175 859 Acetyl xylan esterase WP_025478109.1 Enterococcus saccharol yticus 99 88.97
BB06_RS0103180 561 PadR family transcriptional regulator WP_017552090.1 Bacillus coagulans 100 99.43
BB06_RS0103200 906 Membrane protein 024625654.1 Lactobacillus fabifermentans 99 45.18
BB06_RS0103305 930 Epimerase WP_021357793.1 Lactobacillus plantarum 99 62.50
BB06_RS0103310 660 Capsular polysaccharide biosynthesis protein WP_003680917.1 Lactobacillus coryniformis 93 60.68
BB06_RS0103315 846 Glycosyltransferase WP_003638227.1 Lactobacillus pentosus 96 45.39
BB06_RS0103320 987 Polysaccharide biosynthesis protein YP_004889104.1 Lactobacillus plantarum WCFS1 98 48.32
BB06_RS0104430 1,173 Phage integrase family site-specific recombinase WP_004165738.1 Pediococcus acidilactici DSM 20284 99 75.19
BB06_RS0104450 398 Putative prophage repressor WP_007289487.1 Thermosinus carboxydivorans 97 41.98
BB06_RS0104515 768 Phage protein ERL43462.1 Lactobacillus plantarum JDM1 64 48
BB06_RS0104520 692 Replisome organizer WP_004165758.1 Pediococcus acidilactici 99 66.09
BB06_RS0104600 1,374 Terminase WP_002318686.1 Enterococcus faecium 100 60.18
BB06_RS0104605 1,548 Minor capsid protein WP_022638369.1 Lactobacillus plantarum 98 58.75
BB06_RS0104610 1,134 Minor capsid protein WP_016511174.1 Lactobacillus plantarum 99 49.47
BB06_RS0104645 462 Capsid protein WP_002314916.1 Enterococcus faecium 92 72.03
BB06_RS0104660 5,241 Tail protein WP_002820753.1 Oenococcus oeni 73 35.42
BB06_RS0105620 810 Phage protein WP_012678830.1 Streptococcus equi 92 33.46