Table 4 Genes and their encoded proteins detected in P. pentosaceus LI05 with sequence similarities of less than 50% with sequences from both P. pentosaceus ATCC 25745 and P. pentosaceus SL4
Locus | Size (bp) | Predicted function | Best BLASTp hit | % Query cover | % Amino acid identity | |
|---|---|---|---|---|---|---|
By BLASTp | Accession no. | Organism | ||||
BB06_RS0102945 | 1,110 | Type I restriction endonuclease subunit S | WP_000072560.1 | Staphylococcus aureus | 100 | 49.34 |
BB06_RS0102950 | 912 | Integrase | WP_006845852.1 | Weissella koreensis | 100 | 74.26 |
BB06_RS0102955 | 672 | Type I restriction-modification system, specificity subunit S | WP_003595917.1 | Lactobacillus casei | 100 | 54.71 |
BB06_RS0102980 | 936 | Daunorubicin resistance ATP-binding protein DrrA | YP_004841605.1 | Lactobacillus sanfranciscensis TMW 1.1304 | 100 | 62.06 |
BB06_RS0102995 | 678 | ThiJ/PfpI family protein | WP_010770374.1 | Enterococcus caccae | 99 | 71.42 |
BB06_RS0103035 | 633 | TraX family protein | YP_006726711.1 | Lactobacillus buchneri CD034 | 99 | 50.90 |
BB06_RS0103095 | 618 | Transposase | YP_005004471.1 | Pediococcusclaussenii ATCC BAA-344 | 100 | 98.05 |
BB06_RS0103100 | 2,268 | Daunorubicin resistance protein DrrC | WP_003680292.1 | Lactobacillus coryniformis | 100 | 99.07 |
BB06_RS0103110 | 591 | Integrase | WP_004906016.1 | Leuconostoc citreum | 99 | 97.96 |
BB06_RS0103120 | 468 | Ferritin-like DNA-binding protein | BAN08201.1 | Lactobacillus plantarum 2025 | 100 | 99.35 |
BB06_RS0103125 | 744 | Glycosyltransferase family 2 | WP_027822873.1 | Lactobacillus plantarum | 100 | 99.60 |
BB06_RS0103130 | 1,248 | ABC transporter permease | WP_027822874.1 | Lactobacillus plantarum | 100 | 99.76 |
BB06_RS0103135 | 672 | TetR family transcriptional regulator | WP_027822875.1 | Lactobacillus plantarum | 100 | 99.55 |
BB06_RS0103140 | 339 | Transposase | WP_015474731.1 | Lactobacillus brevis | 95 | 99.07 |
BB06_RS0103155 | 1,308 | Excinuclease ABC subunit A | WP_024862991.1 | Pediococcus acidilactic i | 99 | 72.51 |
BB06_RS0103175 | 859 | Acetyl xylan esterase | WP_025478109.1 | Enterococcus saccharol yticus | 99 | 88.97 |
BB06_RS0103180 | 561 | PadR family transcriptional regulator | WP_017552090.1 | Bacillus coagulans | 100 | 99.43 |
BB06_RS0103200 | 906 | Membrane protein | 024625654.1 | Lactobacillus fabifermentans | 99 | 45.18 |
BB06_RS0103305 | 930 | Epimerase | WP_021357793.1 | Lactobacillus plantarum | 99 | 62.50 |
BB06_RS0103310 | 660 | Capsular polysaccharide biosynthesis protein | WP_003680917.1 | Lactobacillus coryniformis | 93 | 60.68 |
BB06_RS0103315 | 846 | Glycosyltransferase | WP_003638227.1 | Lactobacillus pentosus | 96 | 45.39 |
BB06_RS0103320 | 987 | Polysaccharide biosynthesis protein | YP_004889104.1 | Lactobacillus plantarum WCFS1 | 98 | 48.32 |
BB06_RS0104430 | 1,173 | Phage integrase family site-specific recombinase | WP_004165738.1 | Pediococcus acidilactici DSM 20284 | 99 | 75.19 |
BB06_RS0104450 | 398 | Putative prophage repressor | WP_007289487.1 | Thermosinus carboxydivorans | 97 | 41.98 |
BB06_RS0104515 | 768 | Phage protein | ERL43462.1 | Lactobacillus plantarum JDM1 | 64 | 48 |
BB06_RS0104520 | 692 | Replisome organizer | WP_004165758.1 | Pediococcus acidilactici | 99 | 66.09 |
BB06_RS0104600 | 1,374 | Terminase | WP_002318686.1 | Enterococcus faecium | 100 | 60.18 |
BB06_RS0104605 | 1,548 | Minor capsid protein | WP_022638369.1 | Lactobacillus plantarum | 98 | 58.75 |
BB06_RS0104610 | 1,134 | Minor capsid protein | WP_016511174.1 | Lactobacillus plantarum | 99 | 49.47 |
BB06_RS0104645 | 462 | Capsid protein | WP_002314916.1 | Enterococcus faecium | 92 | 72.03 |
BB06_RS0104660 | 5,241 | Tail protein | WP_002820753.1 | Oenococcus oeni | 73 | 35.42 |
BB06_RS0105620 | 810 | Phage protein | WP_012678830.1 | Streptococcus equi | 92 | 33.46 |