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Table 2 Candidate genes involved in M. rosenbergii immune response against V. parahaemolyticus

From: RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection

Category or gene id Homologues function Species FC*
Antimicrobial    
Unigene4120_all Anti-lipopolysaccharide factor Macrobrachium rosenbergii 4.13
Unigene23546_all Anti-lipopolysaccharide factor 2 Macrobrachium rosenbergii 2.84
CL1276.Contig1_all Anti-lipopolysaccharide factor 3 Macrobrachium rosenbergii 2.15
Unigene37309_all Crustin Macrobrachium rosenbergii 5.13
Unigene26338_all Lysozyme Portunus trituberculatus 1.92
Unigene13073_all NF-kappa B inhibitor alpha Macrobrachium rosenbergii 3.11
Blood clotting system    
Unigene13048_all Clottable protein Marsupenaeus japonicus 1.42
Unigene34308_all Transglutaminase Macrobrachium rosenbergii 11.34
Unigene36567_all Proclotting enzyme Harpegnathos saltator 11.22
Unigene41253_all Coagulation factor XII Hageman factor 10.61
PRPs    
Unigene10978_all Lectin 1 Macrobrachium rosenbergii 4.4
CL4516.Contig1_all Lectin 2 Macrobrachium rosenbergii 1.05
Unigene7825_all Lectin 3 Macrobrachium rosenbergii 2.54
CL3039.Contig4_all Lectin 4 Macrobrachium rosenbergii 4.55
Unigene9635_all C-type lectin Penaeus monodon 1.14
CL1600.Contig1_all C-type lectin-2 Litopenaeus vannamei 1.69
CL5230.Contig3_all C-type lectin 5 Fenneropenaeus chinensis 2
Unigene1391_all Hemolectin Papilio xuthus 5.81
Unigene25701_all M-type lectin Marsupenaeus japonicus 1.69
Unigene23215_all Perlucin-like protein Mytilus galloprovincialis −1.92
CL1075.Contig4_all Tachylectin Macrobrachium rosenbergii −1.71
Unigene28944_all Ficolin Branchiostoma floridae 1.31
Unigene19793_all Lectin B isoform 2 Marsupenaeus japonicus 3.55
Unigene37041_all Mannose-binding protein Procambarus clarkii 11.69
CL1124.Contig1_all Glucan pattern-recognition lipoprotein Fenneropenaeus chinensis 1.12
Unigene23671_all lipopolysaccharide and beta-1,3-glucan binding protein Macrobrachium rosenbergii 1.71
Proteinases and proteinases inhibitors    
Unigene1509_all Cathepsin B Pandalus borealis 1.87
Unigene22859_all Cathepsin C Fenneropenaeus chinensis 2.33
CL1587.Contig2_all Cathepsin D Penaeus monodon −1.56
Unigene26111_all Cathepsin L Pandalus borealis 1.41
CL5824.Contig1_all Serpin serine protease inhibitor Fenneropenaeus chinensis 12.24
CL6038.Contig1_all 26S protease regulatory Nasonia vitripennis 1.44
Unigene12869_all Alpha-2-macroglobulin Macrobrachium rosenbergii 5.09
CL2365.Contig1_all Caspase Marsupenaeus japonicus 1.04
Unigene13293_all Astacin Strongylocentrotus purpuratus 1.64
Unigene13633_all Serine protease Fenneropenaeus chinensis 3.08
Unigene17259_all Caspase 8 Ictalurus punctatus 2.41
CL2565.Contig1_all Serine proteinase inhibitor 6 Penaeus monodon 4.51
CL1118.Contig1_all Serpin B Marsupenaeus japonicus 7.02
Unigene26757_all Hemocyte kazal-type proteinase inhibitor Penaeus monodon 3.87
CL1127.Contig2_all Kazal-type serine proteinase inhibitor 4 Procambarus clarkii −6.01
CL5487.Contig2_all Aminopeptidase N Camponotus floridanus 1.4
Unigene5621_all Masquerade-like serine proteinase-like protein 2 Penaeus monodon 5.39
Unigene21512_all Serine proteinase inhibitor Macrobrachium rosenbergii 6.91
Unigene28987_all CUB-serine protease Panulirus argus 2.92
Heat shock proteins    
Unigene3736_all Heat shock protein 21 Macrobrachium rosenbergii 4.61
Unigene23034_all Heat shock protein 40 Frankliniella occidentalis 1.8
Unigene14757_all Heat shock protein 70 Portunus trituberculatus 2.26
CL4309.Contig3_all Heat shock protein 90 Scylla paramamosain 1.93
Unigene16858_all Small heat shock protein Fenneropenaeus chinensis 2.41
Oxidative stress    
CL353.Contig2_all Glutathione S transferase Procambarus clarkii 1.01
Unigene19405_all Cu/Zn superoxide dismutase Bombyx mori 1.61
CL5590.Contig3_all Glutamine synthetase Panulirus argus −3.03
CL559.Contig1_all Farnesoic acid O-methyltransferase Nilaparvata lugens 1.81
CL2477.Contig1 Catalase Litopenaeus vannamei 1.6
CL2787.Contig2 Thioredoxin reductase Branchiostoma floridae 1.09
Cytoskeletal    
Unigene10471 Chitinase Trichomonas vaginalis 6.16
CL6026.Contig5_all Actin Marsupenaeus japonicus 2.92
Unigene13021_all Calponin Chironomus riparius 2.32
CL5710.Contig1_all Profilin Fenneropenaeus chinensis 1.45
CL461.Contig8_all Tubulin Homarus americanus 1.39
Unigene19173_all Beta-integrin Fenneropenaeus chinensis 2.78
CL2046.Contig1_all Integrin Litopenaeus vannamei 3.03
Signal transduction    
Toll pathway    
CL1915.Contig5_all Toll interacting protein Marsupenaeus japonicus 1.73
CL5402.Contig1_all Toll receptor 2 Marsupenaeus japonicus −2.46
Unigene25507_all Toll-like receptor 3 Daphnia pulex 2.59
CL2421.Contig1_all Toll-like receptor 8 Ixodes scapulari 1.48
Unigene25799_all Myd88 protein Artemia sinica 3.25
Unigene9776_all Caspase Fenneropenaeus merguiensis 3.08
Unigene14481_all Dorsal Fenneropenaeus chinensis 3.19
Wnt signaling pathway    
Unigene36938_all Lipoprotein receptor Callinectes sapidus 10.94
Unigene15960_all Prickle Saccoglossus kowalevskii 1.71
Unigene15970_all Low-density lipoprotein receptor-related protein 6 Daphnia pulex 2.05
Unigene12737_all Glypican 4 Daphnia pulex 1.14
Unigene25938_all Secreted frizzled-related protein 5 Daphnia pulex 1.82
MAPK signaling pathway    
Unigene26817_all Mitogen-activated protein kinase kinase kinase 1 Oryctolagus cuniculus 2.79
Unigene110_all Mitogen-activated protein kinase 8 interacting protein 3 Bombus terrestris 2.94
CL726.Contig3_all Mitogen-activated protein kinase kinase kinase kinase 4 Bombus terrestris 1.65
CL3174.Contig1_all Mitogen-activated protein kinase kinase kinase 7 Danaus plexippus 1.41
Unigene29569_all Mitogen-activated protein kinase kinase kinase 13 Bombus terrestris 4.03
CL4432.Contig2_all Max protein Daphnia pulex −3.11
Unigene14757_all Heat shock protein 70 Portunus trituberculatus 2.26
Unigene3873_all Protein phosphatase 5 Bombus terrestris 1.21
Unigene102_all Map kinase-interacting serine/threonine Scylla paramamosain 2.48
Unigene11596_all Raf homolog serine/threonine-protein kinase phl-like Nasonia vitripennis 2.41
JAK/STAT pathway    
Unigene25562_all STAT long form Penaeus monodon 2.84
Unigene25762_all Signal transducing adaptor molecule Megachile rotundata 1.98
Unigene16474_all Tumor susceptibility gene 101 protein Harpegnathos saltator 2.46
CL1133.Contig6_all Domeless Tribolium castaneum 2.94
Unigene28876_all Thyroid peroxidase Pediculus humanus corporis 3.66
Other signal transduction genes    
CL1409.Contig1_all Innexin 3 Cancer borealis 10.29
Unigene30035_all cAMP-dependent protein kinase type II regulatory subunit Camponotus floridanus 1.05
CL3406.Contig2_all Casein kinase II subunit alpha Danaus plexippus 1.75
CL4247.Contig1_all Rab-protein 14 Tribolium castaneum 1.85
Unigene37520_all Afadin Pediculus humanus corporis 2.89
Unigene34256_all TBC1 domain family member 10B Crassostrea gigas 11.52
Unigene33128_all REM2- and Rab-like small GTPase 1-like Cavia porcellus 3.21
ProPO system    
Unigene12734_all Prophenoloxidase Macrobrachium rosenbergii 3.15
Unigene7353_all Prophenoloxidase activating factor Fenneropenaeus chinensis 3.79
Unigene18337_all Prophenoloxide activating enzyme III Macrobrachium rosenbergii 4.99
Cell death    
Unigene2555_all Beclin 1 Megachile rotundata 11.89
CL1843.Contig2_all ALG-2 interacting protein x Penaeus monodon Penaeus monodon 3.2
Unigene14045_all Program cell death 5-like Penaeus monodon 1.61
CL2477.Contig1_all Catalase Litopenaeus vannamei 1.6
Unigene3163_all inhibitor of apoptosis protein Litopenaeus vannamei 1.02
Unigene9776_all Caspase Fenneropenaeus merguiensis 3.08
Unigene36052_all DNA fragmentation factor subunit beta Danio rerio 3.26
Other immune genes    
CL4920.Contig1_all Calmodulin Procambarus clarkii 1.92
CL1939.Contig4_all Ferritin Litopenaeus vannamei −2.87
CL4071.Contig2_all Peritrophin Macrobrachium nipponense −2.18
Unigene10835_all Selenoprotein W Cricetulus griseus −1.98
Unigene26739_all Metallothionein I Macrobrachium rosenbergii −2.75
Unigene29279_all Selenoprotein L Ciona intestinalis 1.06
CL6324.Contig2_all Arginine kinase 1 Macrobrachium rosenbergii 4.67
CL5294.Contig2_all Hemocyanin Macrobrachium nipponense 1.21
Unigene26326_all Tetraspanin-like protein CD9 Fenneropenaeus chinensis 1.02
CL4316.Contig1_all Crustacyanin-like lipocalin Macrobrachium rosenbergii −4.12
CL6297.Contig2_all E cadherin Tenebrio molitor 3.19
CL2339.Contig2_all Adenosine deaminase Caligus rogercresseyi −1.35
CL3196.Contig2_all Calnexin Penaeus monodon 1.57
CL2701.Contig1_all Ubiquitin-conjugating enzyme Macrobrachium nipponense 1.33
  1. *Fold changes (Log2 ratio) in gene expression. PRPs- pattern recognition proteins, ProPO- prophenoloxidase.