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Table 2 Bacteria in the parental HMA mice and biopsy lysates used for their colonization, as identified by enzymatic tests and microscopy

From: Development of gut inflammation in mice colonized with mucosa-associated bacteria from patients with ulcerative colitis

  Aerobic bacteria Anaerobic bacteria
Biopsy a Klebsiella oxytoca Proteus vulgaris Streptococcus parvulus Actinomyces naeslundii Fusobacterium necrogenes/mortiferum
P aHMA mice Enterococcus faecalis Enterococcus rafinosus Enterococcus faecium Streptococcus parvulus Klebsiella pneumonie Escherichia coli Proteus vulgaris Veillonella parvula Bifidobacterium breve Bifidobaterium sp. Bacteroides capillosus Actinomyces israelli Unidentified G + cocci-rods Unidentified G + rods
Biopsy b Escherichia coli Klebsiella pneumonie Enterococcus flavescens Enterococcus casseliflavus Actinomyces naeslundii Veillonella parvula Bifidobacterium sp.
P bHMA mice Enterococcus casseliflavus Enterococcus faecalis Enterococcus sp. Klebsiella pneumonie Citrobacter amalonaticus Escherichia coli Veillonella parvula Eubacterium lentum Bifidobacterium sp. Actinomyces israelli Lactobacillus sp.
Biopsy c Streptococcus sp. Enterococcus faecium Enterococcus raffinossus Lactobacillus jensenii
P cHMA mice Yeast Enteococcus faecium Enterococcus raffinossus Streptococcus parvulus Clostridium inocuum Bifidobacterium sp. Unidentified G + spore-forming rods