Table 3 Phylogenetic affiliation of DNA sequences retrieved from DGGE bands
Sample | No | GenBank Accession number | Best match | Identity (% similarity) |
|---|---|---|---|---|
Biopsy a | 1 | NR121743 | Streptococcus lutetiensis | 99 |
P aHMA | 2 | NR118699 | Clostridium innocuum | 97 |
NR044648 | Eubacterium tortuosum | 91 | ||
NR113409 | Eubacterium dolichum | 90 | ||
P aHMA | 3 | NR119035 | Clostridium sphenoides | 99 |
P bHMA | 4 | NR118729 | Clostridium oroticum | 98 |
P bHMA | 5 | NR041960 | Blautia luti | 98 |
P bHMA | 6 | NR036800 | Ruminococcus gnavus | 100 |
Biopsy c | 7 | NC017960 | Enterococcus faecium | 98 |
P cHMA | 8 | NR119085 | Clostridium polysaccharolyticum | 97 |
P cHMA | 9 | AB971793 | Clostridium innocuum | 98 |
F1 aHMA | 10 | NR044715 | Clostridium clostridioforme | 96 |
NR036928 | Clostridium hathewayi | 96 | ||
NR118730 | Clostridium symbiosum | 96 | ||
F1 aHMA | 11 | NR118730 | Clostridium symbiosum | 99 |
F1 aHMA | 12 | NR119217 | Blautia producta | 99 |
F1 aHMA | 13 | NR041960 | Blautia luti | 100 |
F1 aHMA | 14 | NR118729 | Clostridium oroticum | 97 |
NR117142 | Eubacterium fissicatena | 97 | ||
NR104803 | Eubacterium contortum | 97 | ||
F1 aHMA | 15 | NR118729 | Clostridium oroticum | 96 |
NR117147 | Eubacterium contortum | 96 | ||
NR117142 | Eubacterium fissicatena | 96 | ||
F4 aHMA | 16 | Â | No siginificant similarity found | Â |
F4 aHMA | 17 | NR074454 | Clostridium difficile | 99 |
F4 aHMA | 18 | NR044841 | Clostridium aurantibutyricum | 98 |
F1 bHMA | 19 | NR118729 | Clostridium oroticum | 98 |
F1 bHMA | 20 | NR041960 | Blautia luti | 98 |
F1 bHMA | 21 | NR041960 | Blautia luti | 100 |
F1 bHMA | 22 | NR036800 | Ruminococcus gnavus | 100 |
F3 bHMA | 23 | NR118729 | Clostridium oroticum | 99 |
F3 bHMA | 24 | Â | No siginificant similarity found | Â |
F3 bHMA | 25 | NR118729 | Clostridium oroticum | 98 |
F3 bHMA | 26 | NR118729 | Clostridium oroticum | 99 |