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Table 3 Phylogenetic affiliation of DNA sequences retrieved from DGGE bands

From: Development of gut inflammation in mice colonized with mucosa-associated bacteria from patients with ulcerative colitis

Sample No GenBank Accession number Best match Identity (% similarity)
Biopsy a 1 NR121743 Streptococcus lutetiensis 99
P aHMA 2 NR118699 Clostridium innocuum 97
NR044648 Eubacterium tortuosum 91
NR113409 Eubacterium dolichum 90
P aHMA 3 NR119035 Clostridium sphenoides 99
P bHMA 4 NR118729 Clostridium oroticum 98
P bHMA 5 NR041960 Blautia luti 98
P bHMA 6 NR036800 Ruminococcus gnavus 100
Biopsy c 7 NC017960 Enterococcus faecium 98
P cHMA 8 NR119085 Clostridium polysaccharolyticum 97
P cHMA 9 AB971793 Clostridium innocuum 98
F1 aHMA 10 NR044715 Clostridium clostridioforme 96
NR036928 Clostridium hathewayi 96
NR118730 Clostridium symbiosum 96
F1 aHMA 11 NR118730 Clostridium symbiosum 99
F1 aHMA 12 NR119217 Blautia producta 99
F1 aHMA 13 NR041960 Blautia luti 100
F1 aHMA 14 NR118729 Clostridium oroticum 97
NR117142 Eubacterium fissicatena 97
NR104803 Eubacterium contortum 97
F1 aHMA 15 NR118729 Clostridium oroticum 96
NR117147 Eubacterium contortum 96
NR117142 Eubacterium fissicatena 96
F4 aHMA 16   No siginificant similarity found  
F4 aHMA 17 NR074454 Clostridium difficile 99
F4 aHMA 18 NR044841 Clostridium aurantibutyricum 98
F1 bHMA 19 NR118729 Clostridium oroticum 98
F1 bHMA 20 NR041960 Blautia luti 98
F1 bHMA 21 NR041960 Blautia luti 100
F1 bHMA 22 NR036800 Ruminococcus gnavus 100
F3 bHMA 23 NR118729 Clostridium oroticum 99
F3 bHMA 24   No siginificant similarity found  
F3 bHMA 25 NR118729 Clostridium oroticum 98
F3 bHMA 26 NR118729 Clostridium oroticum 99
  1. If the identity of the best match was 97 % or less, two other matches were selected. The sequence number correspond to these in Figs. 1, 4 and 5. (For sequences refer to Additional file 1)