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Table 4 Phage-associated regions of KP617 and the reference strains

From: Comparative genomic analysis of Klebsiella pneumoniae subsp. pneumoniae KP617 and PittNDM01, NUHL24835, and ATCC BAA-2146 reveals unique evolutionary history of this strain

Strain

Chromosome/plasmid

Region

Region_length (Kb)

Completeness

Score

#CDS

Region_position

Possible phage

GC_percentage (%)

ATCC BAA-2146

Chromosome

AC1

23.3

Questionable

75

14

596765–620097

Entero_P4

43.01

Chromosome

AC2

52

Intact

100

70

1293924–1345940

Cronob_ENT47670

53.06

Chromosome

AC3

37.5

Intact

150

48

1785522–1823022

Entero_Fels_2 

51.11

Chromosome

AC4

25.7

Incomplete

50

31

2283748–2309524

Entero_mEpX1

52.98

Chromosome

AC5

45.6

Intact

110

62

2342458–2388075

Salmon_SEN34

51.79

Chromosome

AC6

7

Incomplete

30

7

3543581–3550658

Shigel_SfIV

48.73

Chromosome

AC7

45.1

Intact

106

57

3969834–4015015

Salmon_SPN1S

54.61

Chromosome

AC8

24.7

Intact

150

31

4128565–4153295

Salmon_RE_2010

56.56

Chromosome

AC9

25.7

Questionable

90

26

4910621–4936374

Salmon_ST64B

52.32

Plasmid1

AP1-1

16

Questionable

70

13

5385–21439

Staphy_SPbeta_like

57.65

Plasmid2

AP2-1

46

Intact

130

38

3924–49935

Stx2_converting_1717

51.29

Plasmid2

AP2-2

18.1

Questionable

70

23

37308–55427

Staphy_SPbeta_like

50.68

Plasmid2

AP2-3

18.7

Incomplete

30

21

66337–85097

Entero_P1

51.85

KP617

Chromosome

KC1

59.4

Intact

140

78

187337–246765

Salmon_E1

53.99

Chromosome

KC2

52.2

Intact

150

51

1148902–1201105

Entero_HK140

54.02

Chromosome

KC3

37.3

Intact

150

39

1524848–1562220

Salmon_SEN4

50.97

Chromosome

KC4

43.1

Questionable

90

52

4912300–4955407

Escher_HK639

52.40

Chromosome

KC5

20

Incomplete

30

17

5015118–5035178

Entero_phiP27

51.93

Plasmid1

KP1-1

20.7

Incomplete

50

25

123005–143753

Escher_Av_05.

0.4718

NUHL24835

Chromosome

NC1

41.6

Intact

140

47

132925–174606

Entero_HK140

50.75

Chromosome

NC2

12.8

Incomplete

30

14

1481474–1494341

Thermu_phiYS40

58.36

Chromosome

NC3

34.7

Intact

150

32

1524859–1559640

Entero_c_1

52.15

Chromosome

NC4

41.9

Intact

150

52

4283813–4325722

Entero_Fels_2

53.26

Chromosome

NC5

38.7

Intact

150

45

5082826–5121566

Entero_mEp235

50.24

Plasmid1

NP1-1

21.4

Incomplete

30

6

65638–87083

Entero_P1

49.29

PittNDM01

Chromosome

PC1

50.8

Intact

130

63

209103–259953

Vibrio_pYD38_A

53.35

Chromosome

PC2

49.9

Intact

120

65

4847596–4897574

Salmon_SPN3UB

51.59

Chromosome

PC3

20

Incomplete

30

19

4961006–4981067

Entero_P4

51.92

Plasmid1

PP1-1

30.8

Questionable

70

22

124082–154939

Vibrio_pYD38_A

48.18

Plasmid2

PP2-1

34.3

Questionable

70

27

556–34952

Entero_P1

52.30

Plasmid3

PP3-1

50.3

Intact

150

56

8885–59236

Entero_P1

53.90