| Total 16S rRNA gene | Bacteroides spp. | Entero-bacteriaceae | Lactobacillus spp. | Bifidobacterium spp. | F. prausnitzii | Clostridium cluster IV | Roseburia spp./E. rectale |
---|---|---|---|---|---|---|---|---|
Period A (CRO I) | ||||||||
 CR | 11.3 ± 0.2 | 10.3 ± 0.1 | 9.8 ± 0.2 | 7.3 ± 0.3 | 8.4 ± 0.3 | 9.0 ± 0.1 | 9.8 ± 0.2 | 7.4 ± 0.1 |
 TR1 | 11.2 ± 0.2 | 10.1 ± 0.1 | 9.7 ± 0.1 | 7.3 ± 0.2 | 8.3 ± 0.4 | 8.9 ± 0.1 | 9.7 ± 0.2 | 7.4 ± 0.1 |
 TR3 | 11.4 ± 0.07 | 10.1 ± 0.1 | 9.8 ± 0.3 | 7.5 ± 0.1 | 8.2 ± 0.1 | 8.9 ± 0.2 | 9.5 ± 0.5 | 7.4 ± 0.1 |
Period B (CRO II) | ||||||||
 CR | 11.3 ± 0.4 | 10.3 ± 0.5 | 9.6 ± 0.3 | 8.3 ± 0.3 | 8.2 ± 0.2 | 8.9 ± 0.3 | 9.1 ± 0.2 | 6.5 ± 0.1 |
 TR1 | 11.3 ± 0.04 | 10.6 ± 0.3 | 9.7 ± 0.2 | 8.3 ± 0.1 | 6.7 ± 0.2* | 8.6 ± 0.4 | 8.8 ± 0.1* | 6.0 ± 0.4 |
 TR3 | 11.4 ± 0.1 | 10.5 ± 0.1 | 9.5 ± 0.1 | 8.5 ± 0.2 | 6.7 ± 0.3* | 8.6 ± 0.5 | 8.8 ± 0.1* | 6.1 ± 0.2* |
Period E (MTZ) | ||||||||
 CR | 10.9 ± 0.2 | 9.6 ± 0.2 | 10.4 ± 0.2 | 7.6 ± 0.2 | 7.1 ± 0.3 | 9.1 ± 0.1 | 9.7 ± 0.1 | 5.8 ± 0.1 |
 TR1 | 11.2 ± 0.2 | 9.5 ± 0.2 | 9.4 ± 0.5* | 7.7 ± 0.3 | 9.5 ± 0.2* | 5.7 ± 0.1* | 5.9 ± 0.2* | 5.1 ± 0.2* |
 TR4 | 11.1 ± 0.1 | 9.7 ± 0.2 | 9.3 ± 0.3* | 8.1 ± 0.3 | 9.4 ± 0.3* | 6.7 ± 0.1* | 6.7 ± 0.2* | 5.0 ± 0.2* |
Period F (REC) | ||||||||
 CR | 11.3 ± 0.2 | 10.2 ± 0.1 | 10.1 ± 0.4 | 7.2 ± 0.5 | 7.1 ± 0.2 | 8.3 ± 0.2 | 9.7 ± 0.2 | 6.4 ± 0.1 |
 TR1 | 11.7 ± 0.3 | 10.3 ± 0.1 | 10.1 ± 0.3 | 7.4 ± 0.4 | 7.6 ± 0.3* | 8.2 ± 0.3 | 8.5 ± 0.03* | 6.3 ± 0.1 |
 TR4 | 11.3 ± 0.1 | 10.1 ± 0.2 | 10.3 ± 0.4 | 7.4 ± 0.1 | 7.1 ± 0.1 | 7.2 ± 0.2* | 8.6 ± 0.2* | 5.5 ± 0.02* |