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Table 2 PCR primers for screening virulence and antibiotic resistance genes in bacteria isolated from the gut of healthy children in Bangladesh

From: Multi-drug resistant pathogenic bacteria in the gut of young children in Bangladesh

Primer

Primer sequence (5′ → 3′)

Target

Amplicon size (bp)

References

Stx2f

GGCACTGTCTGAAACTGCTCC

stx 2

225

[12]

Stx2r

TCGCCAGTTATCTGACATTCTG

eae1

CTGAACGGCGATTACGCGAA

eae

917

[12]

eae2

CCAGACGATACGATCCAG

INT-1U

GTTCGGTCAAGGTTCTG

intl1

923

[16]

INT-1D

GCCAACTTTCAGCACATG

mphA(F)

GTGAGGAGGAGCTTCGCGAG

mphA

403

[13]

mphA(R)

TGCCGCAGGACTCGGAGGTC

ereB(F)

TTGGAGATACCCAGATTGTAG

ereB

537

[13]

ereB(R)

GAGCCATAGCTTCAACGC

ermB(F)

GAAAAAGTACTCAACCAAATA

ermB

639

[13]

ermB(R)

AATTTAAGTACCGTTACT

INT1

GCTGGATAGGTTAAGGGCGG

Sxt-integrase

592

[17]

INT2

CTCTATGGGCACTGTCCACATTG

TEM(F)

ATTCTTGAAGACGAAAGGGC

bla TEM

1150

[14]

TEM(R)

ACGCTCAGTGGAACGAAAAC

OXA-F

ACACAATACATATCAACTTCGC

Bla OXA

813

[14]

OXA-R

AGTGTGTTTAGAATGGTGATC

SHV-F

CACTCAAGGATGTATTGTG

bla SHV

885

[14]

SHV-R

TTAGCGTTGCCAGTGCTCG

CMY-9(F)

TCAGCGAGCAGACCCTGTTC

bla CMY-9

874

[15]

CMY-9(R)

CTGGCCGGGATGGGATAGTT

CTX-M1(F)

AACCGTCACGCTGTTGTTAG

bla CTX-M1

766

[15]

CTX-M1(R)

TTGAGGCTGGGTGAAGTAAG

CTX-M2(F)

GGCGTTGCGCTGATTAACAC

bla CTX-M2

486

[15]

CTX-M2(R)

TTGCCCTTAAGCCACGTCAC

TetA (F)

GTAATTCTGAGCACTGTCGC

tetA

937

[14]

TetA (R)

CTGCCTGGACAACATTGCTT

TetB (F)

CTCAGTATTCCAAGCCTTTG

tetB

416

[14]

TetB (R)

CTAAGCACTTGTCTCCTGTT

TetD (F)

ATTACACTGCTGGACGCGAT

tetD

1104

[14]

TetD (R)

CTGATCAGCAGACAGATTGC