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Table 2 SNP profiles for S. Tennessee strains

From: Single-nucleotide polymorphism typing analysis for molecular subtyping of Salmonella Tennessee isolates associated with the 2007 nationwide peanut butter outbreak in the United States

Clade Subtype No. of isolates SNP profiles
1 2 3 4 5 6 7 8 9 10 11
1 Subtype1 142 C A G G T G C C G C G
Subtype2 8
Subtype3 9
Subtype4 10
Subtype5 1
2 Subtype6 2 C C A T
3 Subtype7 1 C C T T
4 Subtype8 1 T C A A C A T T T C
Subtype9 2 T C A A C A T T A T C
Typesa S S N S S N S S N S S
Minimal set of SNPsb      * * *     
Clade Subtype No. of isolates SNP profiles
12 13 14 15 16 17 18 19 20 21 22
1 Subtype1 142 G A A A G T A T G G A
Subtype2 8
Subtype3 9
Subtype4 10
Subtype5 1
2 Subtype6 2 G G C C
3 Subtype7 1 G G C C C
4 Subtype8 1 A G G G A C C C A A C
Subtype9 2 A G G G A C C C A A C
Typesa N S S S S S N S S S N
Minimal set of SNPsb       *     *  
Clade Subtype No. of isolates SNP profiles
23 24 25 26 27 28 29 30 31 32 33 34
1 Subtype1 142 T A T T T C G A C T T C
Subtype2 8
Subtype3 9
Subtype4 10
Subtype5 1
2 Subtype6 2 C C A G C C
3 Subtype7 1 C C A G C C
4 Subtype8 1 C G C C C A A G T C C A
Subtype9 2 C G C C C A A G T C C A
Typesa S S S N S S N S S S N S
Minimal set of SNPsb           *   
Clade Subtype No. of isolates SNP profiles
35 36 37 38 39 40 41 42 43 44 45
1 Subtype1 142 C G C G A C A T T T T
Subtype2 8
Subtype3 9
Subtype4 10
Subtype5 1
2 Subtype6 2 T A G C C C
3 Subtype7 1 A G C C C
4 Subtype8 1 T A T A T T G C C C C
Subtype9 2 T A T A T T G C C C C
Typesa S S N S S N N S N S S
Minimal set of SNPsb   * *         *
Clade Subtype No. of isolates SNP profiles
46 47 48 49 50 51 52 53 54 55 56
1 Subtype1 142 T C C A A G C A A A G
Subtype2 8
Subtype3 9
Subtype4 10
Subtype5 1
2 Subtype6 2 C G G A G
3 Subtype7 1 C G G A G G A
4 Subtype8 1 C T T G G A T G G G A
Subtype9 2 C T T G G A T G G G A
Typesa S N N S S S S S N N S
Minimal set of SNPsb        *     
Clade Subtype No. of isolates SNP profiles
57 58 59 60 61 62 63 64 65 66 67
1 Subtype1 142 C C A A T G C C G T G
Subtype2 8
Subtype3 9
Subtype4 10
Subtype5 1
2 Subtype6 2 G G A C
3 Subtype7 1 G G A
4 Subtype8 1 G T G G C T T A C A
Subtype9 2 G T G G C T T T A C A
Typesa N S S N S N S S S S N
Minimal set of SNPsb *         *   *
Clade Subtype No. of isolates SNP profiles
68 69 70 71 72 73 74 75 76 77 78
1 Subtype1 142 A G C G T T A G C G C
Subtype2 8
Subtype3 9
Subtype4 10
Subtype5 1
2 Subtype6 2 G A C C T
3 Subtype7 1 A C C G A
4 Subtype8 1 G A T A C C G A T A T
Subtype9 2 G A T A C C G A T A T
Typesa S S N N S S N S N S S
Minimal set of SNPsb         *    
Clade Subtype No. of isolates SNP profiles
79 80 81 82 83 84
1 Subtype1 142 C C C C G T
Subtype2 8 A
Subtype3 9 C
Subtype4 10 T
Subtype5 1 A A
2 Subtype6 2
3 Subtype7 1 T
4 Subtype8 1 T T
Subtype9 2 T T
Typesa S S S S N N
Minimal set of SNPsb   * * * *  
  1. aTypes of SNPs: N non-synonymous, S synonymous
  2. bMinimal set of SNP markers that can subtype the S. Tennessee strains used in this study