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Table 2 Non-modelled OMPLA insert in Helicobacter sequences

From: Outer membrane phospholipase A’s roles in Helicobacter pylori acid adaptation

Species

Representative strain

Classification

Predicted loop insert

H. acinonychis

Sheeba

Gastric

Insert

H. bizzozeronii

CIII-1

Gastric

Insert

H. cetorum

MIT 99-5656

Gastric

Insert

H. heilmannii

ASB1.4

Gastric

Insert

H. pylori

ATCC 43504

Gastric

Insert

H. suis

HS5 (partially sequenced)

Gastric

Insert

H. felis

ATCC 49179

Gastric

Insert

H. mustelae

12198

Gastric

NA 

H. himalayensis

YS1

Gastric

No insert

H. bilis

ATCC 43879

Enterohepatic

Short insert

H. canadensis

MIT 98-5491

Enterohepatic

No insert

H. canis

NCTC 12740

Enterohepatic

No insert

H. cinaedi

CCUG 18818 = ATCC BAA-847

Enterohepatic

No insert

H. fennelliae

MRY 12-0050

Enterohepatic

Short insert

H. hepaticus

ATCC 51449

Enterohepatic

No insert

H. muridarum

ST-1

Enterohepatic

Short insert

H. pullorum

MIT 98-5489

Enterohepatic

No insert

H. rodentium

ATCC 700285

Enterohepatic

No insert

H. trogontum

ATCC 700114

Enterohepatic

No insert

H. typhlonicus

MIT 97-6810

Enterohepatic

No insert

H. winghamensis

ATCC BAA-430

Enterohepatic

No insert

  1. This table lists Helicobacter species, strain, classification (gastric vs enterohepatic) and whether the OMPLA sequences contain the predicted loop. The “Predicted loop insert”—column lists those species that have a long, unique insert that could not be modelled, but predicted to be a longer loop. They are typically found in gastric bacteria. The term “short insert” indicates shorter loops, likely to have a different function based on their residue composition. See Additional file 4 for the sequence alignment file