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Table 1 General features of the C. difficile genomes

From: Genome characterization of a novel binary toxin-positive strain of Clostridium difficile and comparison with the epidemic 027 and 078 strains

Strain

LC693

VL-0104

VL-0391

R20291

M120

Places of isolation

China

Canada

Canada

UK

UK

Ribotype

027

078

Sequence type

ST201

ST201

ST201

ST1

ST11

Toxin profile

A + B + CDT+

A + B + CDT+

A + B + CDT+

A + B + CDT+

A + B + CDT+

Genome completion

Draft

Draft

Draft

Complete

Complete

Genome size (bp)

4,073,021

4,068,388

4,160,703

4,191,339

4,047,729

GC%

28.5

28.7

28.9

28.6

28.7

Predicted CDSs

3868

3833

3832

3508

3490

Predicted tRNAs

79

77

69

65

86

Predicted rRNAs

9

11

41

28

32

Plasmid

0

0

0

0

0

Prophages

7 (3a)

7 (2a)

8 (3a)

4 (2a)

4 (1a)

  1. aIndicates the number of intact prophages