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Table 3 Prophages predicted in the three ST201 genomes

From: Genome characterization of a novel binary toxin-positive strain of Clostridium difficile and comparison with the epidemic 027 and 078 strains

Phage region Region length (kb) Completeness #CDS Possible phage GC (%)
Strain LC693
 1 28.3 Incomplete 24 PHAGE_Clostr_phiCD505_NC_028764 (6) 27.38
 2 19.7 Incomplete 47 PHAGE_Clostr_CDMH1_NC_024144 (21) 28.15
 3 71.7 Intact 102 PHAGE_Clostr_phiCDHM19_NC_028996 (35) 29.33
 4 27.1 Incomplete 31 PHAGE_Clostr_phiCDHM19_NC_028996 (11) 28.04
 5 7.4 Questionable 6 PHAGE_Paenib_Xenia_NC_028837 (2) 30.32
 6 67.2 Intact 88 PHAGE_Clostr_phiMMP02_NC_019421 (30) 28.69
 7 24.1 Intact 45 PHAGE_Clostr_c_st_NC_007581 (6) 33.26
Strain VL-0104
 1 22.4 Incomplete 19 PHAGE_Clostr_c_st_NC_007581 (3) 28.77
 2 48.3 Intact 58 PHAGE_Clostr_CDMH1_NC_024144 (22) 28.44
 3 27.1 Incomplete 31 PHAGE_Clostr_phiCDHM19_NC_028996 (11) 28.04
 4 48.4 Intact 69 PHAGE_Clostr_phiCD505_NC_028764 (24) 28.27
 5 7.4 Questionable 6 PHAGE_Paenib_Xenia_NC_028837 (2) 30.32
 6 15.6 Incomplete 27 PHAGE_Clostr_phiCD27_NC_011398 (14)  29.98
 7 11.2 Questionable 18 PHAGE_Clostr_c_st_NC_007581 (4) 31.68
Strain VL-0391
 1 22.6 Incomplete 18 PHAGE_Clostr_c_st_NC_007581 (3) 28.79
 2 33.3 Intact 39 PHAGE_Clostr_phiMMP03_NC_028959 (8) 27.45
 3 27.1 Incomplete 31 PHAGE_Clostr_phiCDHM19_NC_028996 (11) 28.04
 4 51.4 Intact 69 PHAGE_Clostr_phiCD505_NC_028764 (23) 28.06
 5 7.4 Questionable PHAGE_Paenib_Xenia_NC_028837 (2) 30.32
 6 34.9 Questionable 37 PHAGE_Clostr_CDMH1_NC_024144 (15) 31.25
 7 25.3 Incomplete 34 PHAGE_Clostr_phiCD27_NC_011398 (12) 31.52
 8 11.1 Intact 23 PHAGE_Clostr_c_st_NC_007581 (3)  32.47