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Table 5 SNPs harbored by the PaLoc comprising genes of the ST201 strains compared with isolates of ST1 and ST11

From: Genome characterization of a novel binary toxin-positive strain of Clostridium difficile and comparison with the epidemic 027 and 078 strains

Strains tcdR tcdB tcdE Tn6218 tcdA tcdC
tnt xis rep xre merR Oxidoreductase Flavodoxin orf σ70
Against R20291 (ST1/027, clade 2)
 LC693 13 459 3 (72 del) 100 5 (144 del)
 VL-0104 13 459 3 (72 del) 100 5 (144 del)
 VL-0391 13 459 3 (72 del) 100 5 (144 del)
Against M120 (ST11/078, clade 5)
 LC693 18 175 2 (72 del) 90 3 (264 del + 20 in)
 VL-0104 18 175 2 (72 del) 90 3 (264 del + 20 in)
 VL-0391 18 175 2 (72 del) 90 3 (264 del + 20 in)