Table 5 SNPs harbored by the PaLoc comprising genes of the ST201 strains compared with isolates of ST1 and ST11
Strains | tcdR | tcdB | tcdE | Tn6218 | tcdA | tcdC | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
tnt | xis | rep | xre | merR | Oxidoreductase | Flavodoxin | orf | σ70 | ||||||
Against R20291 (ST1/027, clade 2) | ||||||||||||||
 LC693 | 13 | 459 | 3 (72 del) | – | – | – | – | – | – | – | – | – | 100 | 5 (144 del) |
 VL-0104 | 13 | 459 | 3 (72 del) | – | – | – | – | – | – | – | – | – | 100 | 5 (144 del) |
 VL-0391 | 13 | 459 | 3 (72 del) | – | – | – | – | – | – | – | – | – | 100 | 5 (144 del) |
Against M120 (ST11/078, clade 5) | ||||||||||||||
 LC693 | 18 | 175 | 2 (72 del) | – | – | – | – | – | – | – | – | – | 90 | 3 (264 del + 20 in) |
 VL-0104 | 18 | 175 | 2 (72 del) | – | – | – | – | – | – | – | – | – | 90 | 3 (264 del + 20 in) |
 VL-0391 | 18 | 175 | 2 (72 del) | – | – | – | – | – | – | – | – | – | 90 | 3 (264 del + 20 in) |