Phylogenomics of Colombian Helicobacter pylori isolates

Table 2 Analysis of genetic diversity, differentiation and genetic flow in total populations

Gen	Population	GDIV						GDIF	GFL
Gen	Population	D	H	Hd	Pi	k	RM	Snn	GammaST	FsT
vacA	Col. and Ref.	−0.40104	126	0.999	0.106	64.83	92	0.283*	0.165 (2.52)	0.074 (6.19)
	Col.		99	0.999	0.061	40.77	98
	Ref.		33	0.997	0.171	120.28	112
horB	Col. and Ref.	−1.99605	120	0.996	0.051	37.21	48	0.339*	0.161 (2.59)	0.105 (4.25)
	Col.		91	0.995	0.031	27.75	43
	Ref.		33	0.995	0.104	76.4	34

The Nm number for each genetic flow test is shown in parentheses. A total of 138 sequences were used for vacA and 140 for horB. Analyses were performed in DnaSP v 5.10
GDIV genetic diversity, GDIF genetic differentiation, GFL genetic flows, Col Colombian strains, Ref reference strains, D Tajima’s test, P compared populations, H number of haplotypes, Hd haplotype diversity, Pi nucleotide diversity, k genetic load
* P = 0.001

ISSN: 1757-4749