TY - JOUR AU - Robins-Browne, R. M. AU - Hartland, E. L. PY - 2002 DA - 2002// TI - Escherichia coli as a cause of diarrhea JO - J Gastroenterol Hepatol VL - 17 UR - https://doi.org/10.1046/j.1440-1746.2002.02769.x DO - 10.1046/j.1440-1746.2002.02769.x ID - Robins-Browne2002 ER - TY - JOUR AU - Wenneras, C. AU - Erling, V. PY - 2004 DA - 2004// TI - Prevalence of enterotoxigenic Escherichia coli-associated diarrhoea and carrier state in the developing world JO - J Health Popul Nutr VL - 22 ID - Wenneras2004 ER - TY - JOUR PY - 2006 DA - 2006// TI - Future directions for research on enterotoxigenic Escherichia coli vaccines for developing countries JO - Wkly Epidemiol Rec VL - 81 ID - ref3 ER - TY - JOUR AU - Nataro, J. P. AU - Kaper, J. B. PY - 1998 DA - 1998// TI - Diarrheagenic Escherichia coli JO - Clin Microbiol Rev VL - 11 ID - Nataro1998 ER - TY - JOUR AU - Qadri, F. AU - Svennerholm, A. M. AU - Faruque, A. S. AU - Sack, R. B. PY - 2005 DA - 2005// TI - Enterotoxigenic Escherichia coli in developing countries: epidemiology, microbiology, clinical features, treatment, and prevention JO - Clin Microbiol Rev VL - 18 UR - https://doi.org/10.1128/CMR.18.3.465-483.2005 DO - 10.1128/CMR.18.3.465-483.2005 ID - Qadri2005 ER - TY - JOUR AU - Gaastra, W. AU - Svennerholm, A. M. PY - 1996 DA - 1996// TI - Colonization factors of human enterotoxigenic Escherichia coli (ETEC) JO - Trends Microbiol VL - 4 UR - https://doi.org/10.1016/0966-842X(96)10068-8 DO - 10.1016/0966-842X(96)10068-8 ID - Gaastra1996 ER - TY - JOUR AU - Croxen, M. A. AU - Law, R. J. AU - Scholz, R. AU - Keeney, K. M. AU - Wlodarska, M. AU - Finlay, B. B. PY - 2013 DA - 2013// TI - Recent advances in understanding enteric pathogenic Escherichia coli JO - Clin Microbiol Rev VL - 26 UR - https://doi.org/10.1128/CMR.00022-13 DO - 10.1128/CMR.00022-13 ID - Croxen2013 ER - TY - JOUR AU - Oh, K. H. AU - Kim, D. W. AU - Jung, S. M. AU - Cho, S. H. PY - 2014 DA - 2014// TI - Molecular characterization of Enterotoxigenic Escherichia coli strains isolated from diarrheal patients in Korea during 2003–2011 JO - PLoS ONE VL - 9 UR - https://doi.org/10.1371/journal.pone.0096896 DO - 10.1371/journal.pone.0096896 ID - Oh2014 ER - TY - JOUR AU - Minogue, T. D. AU - Daligault, H. A. AU - Davenport, K. W. AU - Bishop-Lilly, K. A. AU - Broomall, S. M. AU - Bruce, D. C. AU - Chain, P. S. AU - Chertkov, O. AU - Coyne, S. R. AU - Freitas, T. PY - 2014 DA - 2014// TI - Complete genome assembly of Escherichia coli ATCC 25922, a serotype O6 reference strain JO - Genome Announc VL - 2 ID - Minogue2014 ER - TY - JOUR AU - Pattabiraman, V. AU - Bopp, C. A. PY - 2015 DA - 2015// TI - Draft whole-genome sequences of 10 enterotoxigenic Escherichia coli serogroup O6 strains JO - Genome Announc VL - 3 UR - https://doi.org/10.1128/genomeA.00564-15 DO - 10.1128/genomeA.00564-15 ID - Pattabiraman2015 ER - TY - JOUR AU - Pattabiraman, V. AU - Bopp, C. A. PY - 2014 DA - 2014// TI - Draft whole-genome sequences of 10 serogroup O6 enterotoxigenic Escherichia coli strains JO - Genome Announc VL - 2 UR - https://doi.org/10.1128/genomeA.01274-14 DO - 10.1128/genomeA.01274-14 ID - Pattabiraman2014 ER - TY - JOUR AU - Madhavan, T. P. AU - Steen, J. A. AU - Hugenholtz, P. AU - Sakellaris, H. PY - 2014 DA - 2014// TI - Genome sequence of enterotoxigenic Escherichia coli strain B2C JO - Genome Announc VL - 2 ID - Madhavan2014 ER - TY - JOUR AU - Trees, E. AU - Strockbine, N. AU - Changayil, S. AU - Ranganathan, S. AU - Zhao, K. AU - Weil, R. AU - MacCannell, D. AU - Sabol, A. AU - Schmidtke, A. AU - Martin, H. PY - 2014 DA - 2014// TI - Genome sequences of 228 Shiga toxin-producing Escherichia coli isolates and 12 isolates representing other diarrheagenic E. coli pathotypes JO - Genome Announc VL - 2 UR - https://doi.org/10.1128/genomeA.00718-14 DO - 10.1128/genomeA.00718-14 ID - Trees2014 ER - TY - JOUR AU - Li, R. AU - Zhu, H. AU - Ruan, J. AU - Qian, W. AU - Fang, X. AU - Shi, Z. AU - Li, Y. AU - Li, S. AU - Shan, G. AU - Kristiansen, K. PY - 2010 DA - 2010// TI - De novo assembly of human genomes with massively parallel short read sequencing JO - Genome Res VL - 20 UR - https://doi.org/10.1101/gr.097261.109 DO - 10.1101/gr.097261.109 ID - Li2010 ER - TY - JOUR AU - Aziz, R. K. AU - Bartels, D. AU - Best, A. A. AU - DeJongh, M. AU - Disz, T. AU - Edwards, R. A. AU - Formsma, K. AU - Gerdes, S. AU - Glass, E. M. AU - Kubal, M. PY - 2008 DA - 2008// TI - The RAST server: rapid annotations using subsystems technology JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-75 DO - 10.1186/1471-2164-9-75 ID - Aziz2008 ER - TY - JOUR AU - Joensen, K. G. AU - Tetzschner, A. M. AU - Iguchi, A. AU - Aarestrup, F. M. AU - Scheutz, F. PY - 2015 DA - 2015// TI - Rapid and easy in silico serotyping of Escherichia coli isolates by use of whole-genome sequencing data JO - J Clin Microbiol VL - 53 UR - https://doi.org/10.1128/JCM.00008-15 DO - 10.1128/JCM.00008-15 ID - Joensen2015 ER - TY - JOUR AU - Wirth, T. AU - Falush, D. AU - Lan, R. AU - Colles, F. AU - Mensa, P. AU - Wieler, L. H. AU - Karch, H. AU - Reeves, P. R. AU - Maiden, M. C. AU - Ochman, H. PY - 2006 DA - 2006// TI - Sex and virulence in Escherichia coli: an evolutionary perspective JO - Mol Microbiol VL - 60 UR - https://doi.org/10.1111/j.1365-2958.2006.05172.x DO - 10.1111/j.1365-2958.2006.05172.x ID - Wirth2006 ER - TY - JOUR AU - Khan, N. H. AU - Ahsan, M. AU - Yoshizawa, S. AU - Hosoya, S. AU - Yokota, A. AU - Kogure, K. PY - 2008 DA - 2008// TI - Multilocus sequence typing and phylogenetic analyses of Pseudomonas aeruginosa Isolates from the ocean JO - Appl Environ Microbiol VL - 74 UR - https://doi.org/10.1128/AEM.02322-07 DO - 10.1128/AEM.02322-07 ID - Khan2008 ER - TY - JOUR AU - Glaeser, S. P. AU - Kampfer, P. PY - 2015 DA - 2015// TI - Multilocus sequence analysis (MLSA) in prokaryotic taxonomy JO - Syst Appl Microbiol VL - 38 UR - https://doi.org/10.1016/j.syapm.2015.03.007 DO - 10.1016/j.syapm.2015.03.007 ID - Glaeser2015 ER - TY - JOUR AU - Angiuoli, S. V. AU - Salzberg, S. L. PY - 2011 DA - 2011// TI - Mugsy: fast multiple alignment of closely related whole genomes JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btq665 DO - 10.1093/bioinformatics/btq665 ID - Angiuoli2011 ER - TY - JOUR AU - Price, M. N. AU - Dehal, P. S. AU - Arkin, A. P. PY - 2009 DA - 2009// TI - FastTree: computing large minimum evolution trees with profiles instead of a distance matrix JO - Mol Biol Evol VL - 26 UR - https://doi.org/10.1093/molbev/msp077 DO - 10.1093/molbev/msp077 ID - Price2009 ER - TY - STD TI - Stamatakis A. Phylogenetic models of rate heterogeneity: a high performance computing perspective. 2006 IPDPS, 20th International Parallel and Distributed Processing Symposium 2006. ID - ref22 ER - TY - JOUR AU - Chen, L. AU - Yang, J. AU - Yu, J. AU - Yao, Z. AU - Sun, L. AU - Shen, Y. AU - Jin, Q. PY - 2005 DA - 2005// TI - VFDB: a reference database for bacterial virulence factors JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki008 DO - 10.1093/nar/gki008 ID - Chen2005 ER - TY - JOUR AU - Rasko, D. A. AU - Myers, G. S. AU - Ravel, J. PY - 2005 DA - 2005// TI - Visualization of comparative genomic analyses by BLAST score ratio JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-2 DO - 10.1186/1471-2105-6-2 ID - Rasko2005 ER - TY - JOUR AU - Guerra, J. A. AU - Romero-Herazo, Y. C. AU - Arzuza, O. AU - Gomez-Duarte, O. G. PY - 2014 DA - 2014// TI - Phenotypic and genotypic characterization of enterotoxigenic Escherichia coli clinical isolates from northern Colombia JO - South America. Biomed Res Int VL - 2014 ID - Guerra2014 ER - TY - JOUR AU - Clemens, J. AU - Savarino, S. AU - Abu-Elyazeed, R. AU - Safwat, M. AU - Rao, M. AU - Wierzba, T. AU - Svennerholm, A. M. AU - Holmgren, J. AU - Frenck, R. AU - Park, E. PY - 2004 DA - 2004// TI - Development of pathogenicity-driven definitions of outcomes for a field trial of a killed oral vaccine against enterotoxigenic Escherichia coli in Egypt: application of an evidence-based method JO - J Infect Dis VL - 189 UR - https://doi.org/10.1086/386288 DO - 10.1086/386288 ID - Clemens2004 ER - TY - JOUR AU - Valvatne, H. AU - Steinsland, H. AU - Sommerfelt, H. PY - 2002 DA - 2002// TI - Clonal clustering and colonization factors among thermolabile and porcine thermostable enterotoxin-producing Escherichia coli JO - APMIS VL - 110 UR - https://doi.org/10.1034/j.1600-0463.2002.1100911.x DO - 10.1034/j.1600-0463.2002.1100911.x ID - Valvatne2002 ER - TY - JOUR AU - Tsen, H. Y. AU - Chen, T. R. PY - 1992 DA - 1992// TI - Use of the polymerase chain reaction for specific detection of type A, D and E enterotoxigenic Staphylococcus aureus in foods JO - Appl Microbiol Biotechnol VL - 37 UR - https://doi.org/10.1007/BF00240750 DO - 10.1007/BF00240750 ID - Tsen1992 ER - TY - JOUR AU - Burgos, Y. AU - Beutin, L. PY - 2010 DA - 2010// TI - Common origin of plasmid encoded alpha-hemolysin genes in Escherichia coli JO - BMC Microbiol VL - 10 UR - https://doi.org/10.1186/1471-2180-10-193 DO - 10.1186/1471-2180-10-193 ID - Burgos2010 ER - TY - JOUR AU - Lim, J. Y. AU - Yoon, J. AU - Hovde, C. J. PY - 2010 DA - 2010// TI - A brief overview of Escherichia coli O157: H7 and its plasmid O157 JO - J Microbiol Biotechnol VL - 20 ID - Lim2010 ER - TY - JOUR AU - Gonzales, L. AU - Sanchez, S. AU - Zambrana, S. AU - Iniguez, V. AU - Wiklund, G. AU - Svennerholm, A. M. AU - Sjoling, A. PY - 2013 DA - 2013// TI - Molecular characterization of enterotoxigenic Escherichia coli isolates recovered from children with diarrhea during a 4-year period (2007–2010) in Bolivia JO - J Clin Microbiol VL - 51 UR - https://doi.org/10.1128/JCM.02971-12 DO - 10.1128/JCM.02971-12 ID - Gonzales2013 ER - TY - JOUR AU - Canto, F. AU - Valenzuela, P. AU - Cantero, L. AU - Bronstein, J. AU - Blanco, J. E. AU - Blanco, J. AU - Prado, V. AU - Levine, M. AU - Nataro, J. AU - Sommerfelt, H. PY - 2011 DA - 2011// TI - Distribution of classical and nonclassical virulence genes in enterotoxigenic Escherichia coli isolates from Chilean children and tRNA gene screening for putative insertion sites for genomic islands JO - J Clin Microbiol VL - 49 UR - https://doi.org/10.1128/JCM.02473-10 DO - 10.1128/JCM.02473-10 ID - Canto2011 ER - TY - JOUR AU - Turner, S. M. AU - Chaudhuri, R. R. AU - Jiang, Z. D. AU - DuPont, H. AU - Gyles, C. AU - Penn, C. W. AU - Pallen, M. J. AU - Henderson, I. R. PY - 2006 DA - 2006// TI - Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages JO - J Clin Microbiol VL - 44 UR - https://doi.org/10.1128/JCM.01474-06 DO - 10.1128/JCM.01474-06 ID - Turner2006 ER -