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Table 1 Genome characteristics of Vibrio cholerae O139 Indian isolates

From: Prevailing clone (ST69) of Vibrio cholerae O139 in India over 10 years

S. no Isolate Year of isolation GC content (%) Coverage (X) CDS rRNA tRNA ARDB CARD Sequence type Confirmed CRISPR IS elements Antimicrobial resistance genes Plasmids Accession nos.
1 FC1105 2005 47.5 84.7 3785 12 71 6 17 ST69 IS3-ISVch4
IS200-IS1004
ISAs1-IS1358
IS481
Tn3-ISShfr9
IS66-ISPsy43
IS5-ISVch8
IS5-ISVch5
IS3-ISVch4
Tn3-ISPsy42
strA, strB, floR, catB9, sul2 NGQZ00000000
2 FC1225 2001 47.5 81.7 3796 13 71 2 14 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
catB9 NGQY00000000
3 FC1341 2002 47.5 74.7 3763 12 72 2 14 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
catB9 NGQX00000000
4 FC1384 2000 47.5 96 3797 12 77 7 18 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
strA, strB, floR, catB9, sul2 NGQW00000000
5 FC1817 1994 47.5 69.1 3845 11 75 6 17 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
strA, strB, floR, catB9, sul2 NGQV00000000
6 FC1877 1995 47.5 82.4 3750 12 73 6 17 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
strA, strB, floR, catB9, sul2 NGQU00000000
7 FC2271 1997 47.5 80.7 3785 14 75 6 17 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
strA, strB, floR, catB9, sul2 NGQT00000000
8 FC2273 1998 47.5 77.4 3797 10 71 6 17 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
strA, strB, floR, catB9, sul2 NGQS00000000
9 FC3611a 1999 47.5 84.8 3801 11 78 6 17 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
strA, strB, floR, catB9, sul2 NGQR00000000
10 FC3611b 1997 47.5 92.9 3819 10 72 6 17 ST69 IS3-ISVch4
IS481-ISVch1
Tn3-ISShfr9
IS200-IS1004
ISAs1-IS1358
IS5-ISVch5
strA, strB, floR, catB9, sul2 NGQQ00000000
  1. −, negative