Table 1 Genome characteristics of Vibrio cholerae O139 Indian isolates
From: Prevailing clone (ST69) of Vibrio cholerae O139 in India over 10 years
S. no | Isolate | Year of isolation | GC content (%) | Coverage (X) | CDS | rRNA | tRNA | ARDB | CARD | Sequence type | Confirmed CRISPR | IS elements | Antimicrobial resistance genes | Plasmids | Accession nos. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | FC1105 | 2005 | 47.5 | 84.7 | 3785 | 12 | 71 | 6 | 17 | ST69 | − | IS3-ISVch4 IS200-IS1004 ISAs1-IS1358 IS481 Tn3-ISShfr9 IS66-ISPsy43 IS5-ISVch8 IS5-ISVch5 IS3-ISVch4 Tn3-ISPsy42 | strA, strB, floR, catB9, sul2 | − | NGQZ00000000 |
2 | FC1225 | 2001 | 47.5 | 81.7 | 3796 | 13 | 71 | 2 | 14 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | catB9 | − | NGQY00000000 |
3 | FC1341 | 2002 | 47.5 | 74.7 | 3763 | 12 | 72 | 2 | 14 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | catB9 | − | NGQX00000000 |
4 | FC1384 | 2000 | 47.5 | 96 | 3797 | 12 | 77 | 7 | 18 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | strA, strB, floR, catB9, sul2 | − | NGQW00000000 |
5 | FC1817 | 1994 | 47.5 | 69.1 | 3845 | 11 | 75 | 6 | 17 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | strA, strB, floR, catB9, sul2 | − | NGQV00000000 |
6 | FC1877 | 1995 | 47.5 | 82.4 | 3750 | 12 | 73 | 6 | 17 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | strA, strB, floR, catB9, sul2 | − | NGQU00000000 |
7 | FC2271 | 1997 | 47.5 | 80.7 | 3785 | 14 | 75 | 6 | 17 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | strA, strB, floR, catB9, sul2 | − | NGQT00000000 |
8 | FC2273 | 1998 | 47.5 | 77.4 | 3797 | 10 | 71 | 6 | 17 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | strA, strB, floR, catB9, sul2 | − | NGQS00000000 |
9 | FC3611a | 1999 | 47.5 | 84.8 | 3801 | 11 | 78 | 6 | 17 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | strA, strB, floR, catB9, sul2 | − | NGQR00000000 |
10 | FC3611b | 1997 | 47.5 | 92.9 | 3819 | 10 | 72 | 6 | 17 | ST69 | − | IS3-ISVch4 IS481-ISVch1 Tn3-ISShfr9 IS200-IS1004 ISAs1-IS1358 IS5-ISVch5 | strA, strB, floR, catB9, sul2 | − | NGQQ00000000 |