Table 1 List of Salmonella enterica strains isolated and sequenced from wild life and the corresponding metadata
Strain ID | Serovar | Year | Animal | NCBI SRA BioSample ID | NCBI SRA ID |
|---|---|---|---|---|---|
ADRDL-001 | Poona | 1993 | Alligator omentum | SAMN06330630 | SRR5278825 |
ADRDL-002 | Typhimurium | 1993 | Auodad feces | SAMN06330629 | SRR5278822 |
ADRDL-003 | Gaminara | 1994 | Ratite intestine | SAMN06330628 | SRR5278823 |
ADRDL-004 | Lille | 1993 | Gamebird embryo | SAMN06330627 | SRR5278827 |
ADRDL-005 | Typhimurium | 1993 | Ratite feces | SAMN06333495 | SRR5278819 |
ADRDL-006 | Typhimurium | 1993 | Ratite feces | SAMN06333494 | SRR5278824 |
ADRDL-007 | Thompson | 1993 | Ratite cecum | SAMN06333493 | SRR5278802 |
ADRDL-008 | Livington | 1993 | Ratite cecum | SAMN06333492 | SRR5278806 |
ADRDL-009 | Typhimurium | 1993 | Ratite feces | SAMN06333491 | SRR5278801 |
ADRDL-010 | Montevideo | 1993 | Ratite feces | SAMN06333489 | SRR5278805 |
ADRDL-011 | 6,7-nonmotile | 1993 | Ratite intestine | SAMN06333488 | SRR5278804 |
ADRDL-012 | Arechavaleta | 1994 | Ratite intestine | SAMN06333486 | SRR5278803 |
ADRDL-013 | 4,5,12:i-monophasic | 1994 | Ratite liver | SAMN06333485 | SRR5380966 |
ADRDL-014 | Berta | 1994 | Ratite intestine | SAMN06333484 | SRR5278808 |
ADRDL-015 | Ituri | 1994 | Ratite cecum | SAMN06333483 | SRR5278773 |
ADRDL-016 | Ituri | 1994 | Ratite intestine | SAMN06333482 | SRR5278772 |
ADRDL-017 | Heidelberg | 1993 | Wild turkey liver | SAMN06333481 | SRR5278779 |
ADRDL-018 | Heidelberg | 1993 | Wild turkey liver | SAMN06333480 | SRR5278777 |
ADRDL-019 | Godesberg | 1993 | Wild turkey cecum | SAMN06333479 | SRR5278778 |
ADRDL-020 | 4,5,12:i-monophasic | 1993 | Eclectus colon | SAMN06333477 | SRR5278771 |
ADRDL-021 | Anatum | 1993 | Giraffe feces | SAMN06333476 | SRR5278774 |
ADRDL-022 | Anatum | 1993 | Giraffe feces | SAMN06333475 | SRR5278780 |
ADRDL-023 | Pomona | 1993 | Python abdominal swab | SAMN06333473 | SRR5278767 |
ADRDL-024 | Muenchen | 1993 | Ratite intestine | SAMN06333472 | SRR5278776 |
ADRDL-025 | Typhimurium | 1994 | Rodent intestine | SAMN06333471 | SRR5278770 |
ADRDL-026 | Hadar | 1995 | Wild chicken intestine | SAMN06333470 | SRR5278768 |
ADRDL-027 | Hadar | 1994 | Ratite intestine | SAMN06333469 | SRR5278769 |
ADRDL-028 | Typhimurium | 1988 | Primate intestine | SAMN06333465 | SRR5278873 |
ADRDL-029 | Albany | 1988 | Saiga intestine | SAMN06333464 | SRR5278882 |
ADRDL-030 | Arizona | 1988 | Snake | SAMN06333462 | SRR5330438 |
ADRDL-031 | Arizona | 1989 | Boa intestinal swab | SAMN06333460 | SRR5330446 |
ADRDL-032 | 16:z10-e,n,xz15 | 1989 | Cervine feces | SAMN06333459 | SRR5330441 |
ADRDL-033 | Enteritidis | 1989 | Hedgehog spleen | SAMN06333458 | SRR5330440 |
ADRDL-034 | Typhimurium(O5−)* | 1992 | Pigeon airsac swab | SAMN06333457 | SRR5330448 |
ADRDL-035 | Typhimurium | 1989 | Screech owl liver | SAMN06333455 | SRR5330445 |
ADRDL-036 | Braenderup | 1989 | Snow leopard intestine | SAMN06333454 | SRR5330444 |
ADRDL-037 | Saintpaul | 1989 | Snow leopard lung | SAMN06333453 | SRR5330406 |
ADRDL-038 | Montevideo | 1992 | Cervid intestine | SAMN06333451 | SRR5329403 |
ADRDL-039 | Enteriditis | 1993 | Emu feces | SAMN06333450 | SRR5329404 |
ADRDL-040 | Enteriditis | 1993 | Emu feces | SAMN06333449 | SRR5380965 |
ADRDL-041 | Worthington | 1992 | Quail intestine | SAMN06333448 | SRR5380958 |
ADRDL-042 | II 43:z4,z23:- or IIIa 43:z4,z23:- or Farmingdale or IV 43:z4,z23:-* | 1992 | Reptile eggsac | SAMN06333447 | SRR5329405 |
ADRDL-043 | Panama | 1992 | Rhea intestine | SAMN06333694 | SRR5409894 |
ADRDL-044 | Ituri | 1994 | Ratite cecum | SAMN06333692 | SRR5409893 |
ADRDL-045 | Newport | 1995 | Ratite feces | SAMN06333691 | SRR5409493 |
ADRDL-046 | Newport | 1995 | Dolphin lung | SAMN06333689 | SRR5409890 |
ADRDL-047 | Typhimurium | 1997 | Psittacine lung | SAMN06333684 | SRR5409485 |
ADRDL-048 | Typhimurium | 1997 | Psittacine intestine | SAMN06333683 | SRR5409315 |
ADRDL-049 | Muenchen | 1996 | Ratite intestine | SAMN06333682 | SRR5409313 |
ADRDL-050 | Schwazengrund | 1997 | Ratite intestine | SAMN06333681 | SRR5409312 |
ADRDL-051 | Archavaleta | 1997 | Antelope intestine | SAMN06333692 | SRR5409893 |
ADRDL-052 | Infantis | 1997 | Fish water | SAMN06645614 | SRR5398012 |
ADRDL-053 | Bredeney | 1998 | Llama intestine | SAMN06333861 | SRR5409360 |
ADRDL-054 | Plymouth | 1997 | Reptile liver | SAMN06330627 | SRR5278827 |
ADRDL-055 | Montevideo | 1997 | Reptile intestine | SAMN06645663 | SRR5398013 |
ADRDL-056 | Branderup | 1995 | Wild chicken intestine | SAMN06645590 | SRR5387496 |
ADRDL-057 | Enteriditis | 1996 | Wild chicken intestine | SAMN06645569 | SRR5387492 |
ADRDL-058 | Typhimurium | 1996 | Wild chicken feces | SAMN06645567 | SRR5387491 |
ADRDL-059 | Bredeney | 1995 | Gamebird intestine | SAMN06645592 | SRR5387497 |
ADRDL-060 | Livingston | 1996 | Gamebird intestine | SAMN06645590 | SRR5387496 |
ADRDL-061 | Enteriditis | 1995 | Psittacine intestine | SAMN06645588 | SRR5387490 |
ADRDL-062 | Montevideo | 1996 | Psittacine liver | SAMN06645587 | SRR5387493 |
ADRDL-063 | 7,14:K-monophasic | 1995 | Ratite intestine | SAMN06645585 | SRR5387523 |
ADRDL-064 | Anatum | 1995 | Ratite feces | SAMN06645654 | SRR5387521 |
ADRDL-065 | Enteriditis | 1995 | Ratite | SAMN06645582 | SRR5387527 |
ADRDL-066 | Thompson | 1995 | Ratite cloacal swab | SAMN06645594 | SRR5387519 |
ADRDL-067 | Thompson | 1995 | Ratite cloacal swab | SAMN06645593 | SRR5387517 |
ADRDL-068 | 4,5,12: i | 1995 | Ratite pericardial fluid | SAMN06645652 | SRR5387518 |
ADRDL-069 | Livingston | 1996 | Llama intestine | SAMN06645650 | SRR5387514 |
ADRDL-070 | Uganda | 1999 | Cervine intestine | SAMN06645664 | SRR5398014 |
ADRDL-071 | Lille | 2000 | Cervine intestine | SAMN06645663 | SRR5398013 |
ADRDL-072 | Parera | 1998 | Iguana cloacal swab | SAMN06645662 | SRR5398016 |
ADRDL-073 | Anatum | 1998 | Ratite feces | SAMN06645661 | SRR5398025 |
ADRDL-074 | Anatum | 1998 | Ratite feces | SAMN06645615 | SRR5398018 |
ADRDL-075 | Kiambu | 1998 | Ratite cloacal swab | SAMN06645614 | SRR5398012 |
ADRDL-076 | Marina | 2000 | Reptile feces | SAMN06645660 | SRR5398017 |
ADRDL-077 | Bredeney | 2003 | Alpaca liver | SAMN06645613 | SRR5398015 |
ADRDL-078 | Sandiego | 2003 | Alpaca feces | SAMN06645612 | SRR5398009 |
ADRDL-079 | Sandiego | 2003 | Alpaca feces | SAMN06645611 | SRR5398010 |
ADRDL-080 | Bredeney | 2003 | Antelope feces | SAMN06645610 | SRR5398011 |
ADRDL-081 | Virginia or Muenchen* | 2002 | Ratite | SAMN06645609 | SRR5398008 |
ADRDL-082 | Newport* | 2002 | Ratite | SAMN06645659 | SRR5398007 |
ADRDL-083 | Enteritidis* | 2002 | Ratite | SAMN06645658 | SRR5398001 |
ADRDL-084 | Oranienburg | 2003 | Iguana cloacal swab | SAMN06645657 | SRR5398006 |
ADRDL-085 | Give | 2003 | Iguana cloacal swab | SAMN06658957 | SRR5409330 |
ADRDL-086 | Chameleon | 2003 | Iguana cloacal swab | SAMN06333875 | SRR5387539 |
ADRDL-087 | Typhimurium | 2002 | Llama feces | SAMN06333874 | SRR5387538 |
ADRDL-088 | Anatum | 2003 | Llama feces | SAMN06333873 | SRR5387533 |
ADRDL-089 | Typhimurium | 2003 | Llama feces | SAMN06333872 | SRR5387534 |
ADRDL-090 | Agona | 2003 | Marsupial intestine | SAMN06333871 | SRR5387532 |
ADRDL-091 | Miami | 2001 | Reptile fecal swab | SAMN06658960 | SRR5409328 |
ADRDL-092 | Arizona | 2001 | Reptile liver | SAMN06658959 | SRR5409327 |
ADRDL-093 | 2001 | Reptile cloacal swab | SAMN06658958 | SRR5409325 | |
ADRDL-094 | Marina | 2002 | Reptile cloacal swab | SAMN06658962 | SRR5409322 |
ADRDL-095 | Marina | 2002 | Reptile abscess swab | SAMN06658961 | SRR5409324 |
ADRDL-096 | Arizona | 2002 | Reptile lung | SAMN06333869 | SRR5387526 |
ADRDL-097 | Parera | 2002 | Reptile cloacal swab | SAMN06333866 | SRR5397979 |
ADRDL-098 | Chameleon | 2002 | Reptile cloacal swab | SAMN06333865 | SRR5397978 |
ADRDL-099 | Senftenberg | 2002 | Reptile cloacal swab | SAMN06333864 | SRR5397977 |
ADRDL-100 | Arizona | 2002 | Reptile cloacal swab | SAMN06333863 | SRR5409363 |
ADRDL-101 | Arizona | 2002 | Reptile cloacal swab | SAMN06333862 | SRR5409361 |
ADRDL-102 | Kisarwe | 2003 | Reptile cloacal swab | SAMN06333861 | SRR5409360 |
ADRDL-103 | Newport | 2003 | Turtle intestine | SAMN06333859 | SRR5409359 |