TY - JOUR AU - Gulig, P. A. AU - Bourdage, K. L. AU - Starks, A. M. PY - 2005 DA - 2005// TI - Molecular pathogenesis of Vibrio vulnificus JO - J Microbiol VL - 43 Spec No ID - Gulig2005 ER - TY - JOUR AU - Jones, M. K. AU - Oliver, J. D. PY - 2009 DA - 2009// TI - Vibrio vulnificus: disease and pathogenesis JO - Infect Immun VL - 77 UR - https://doi.org/10.1128/IAI.01046-08 DO - 10.1128/IAI.01046-08 ID - Jones2009 ER - TY - JOUR AU - Hong, G. PY - 2014 DA - 2014// TI - Emergency treatment of 16 patients with necrotizing fasciitis caused by Vibrio vulnificus infection complicated with septic shock JO - Chin Med J VL - 127 ID - Hong2014 ER - TY - JOUR AU - Chao, W. N. PY - 2013 DA - 2013// TI - Impact of timing of surgery on outcome of Vibrio vulnificus-related necrotizing fasciitis JO - Am J Surg VL - 206 UR - https://doi.org/10.1016/j.amjsurg.2012.08.008 DO - 10.1016/j.amjsurg.2012.08.008 ID - Chao2013 ER - TY - JOUR AU - Zhao, H. PY - 2015 DA - 2015// TI - Correlations between clinical features and mortality in patients with Vibrio vulnificus infection JO - PLoS ONE VL - 10 UR - https://doi.org/10.1371/journal.pone.0136019 DO - 10.1371/journal.pone.0136019 ID - Zhao2015 ER - TY - JOUR AU - Pan, J. H. PY - 2016 DA - 2016// TI - Drug resistance phenotype and molecular characteristics of a virulent Vibrio vulnificus strain isolated fom a fatal case JO - Dis Surveill VL - 31 ID - Pan2016 ER - TY - JOUR AU - Luo, R. PY - 2012 DA - 2012// TI - SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler JO - GigaScience VL - 1 UR - https://doi.org/10.1186/2047-217X-1-18 DO - 10.1186/2047-217X-1-18 ID - Luo2012 ER - TY - JOUR AU - Lowe, T. M. AU - Eddy, S. R. PY - 1997 DA - 1997// TI - tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.5.0955 DO - 10.1093/nar/25.5.0955 ID - Lowe1997 ER - TY - JOUR AU - Lagesen, K. PY - 2007 DA - 2007// TI - RNAmmer: consistent and rapid annotation of ribosomal RNA genes JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm160 DO - 10.1093/nar/gkm160 ID - Lagesen2007 ER - TY - JOUR AU - Gardner, P. P. PY - 2009 DA - 2009// TI - Rfam: updates to the RNA families database JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn766 DO - 10.1093/nar/gkn766 ID - Gardner2009 ER - TY - JOUR AU - Saha, S. AU - Bridges, S. AU - Magbanua, Z. V. AU - Peterson, D. G. PY - 2008 DA - 2008// TI - Empirical comparison of ab initio repeat finding programs JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn064 DO - 10.1093/nar/gkn064 ID - Saha2008 ER - TY - JOUR AU - Benson, G. PY - 1999 DA - 1999// TI - Tandem repeats finder: a program to analyze DNA sequences JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.2.573 DO - 10.1093/nar/27.2.573 ID - Benson1999 ER - TY - JOUR AU - Besemer, J. AU - Lomsadze, A. AU - Borodovsky, M. PY - 2001 DA - 2001// TI - GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.12.2607 DO - 10.1093/nar/29.12.2607 ID - Besemer2001 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Kanehisa, M. PY - 1997 DA - 1997// TI - A database for post-genome analysis JO - Trends Genet VL - 13 UR - https://doi.org/10.1016/S0168-9525(97)01223-7 DO - 10.1016/S0168-9525(97)01223-7 ID - Kanehisa1997 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Kawashima, S. AU - Okuno, Y. AU - Hattori, M. PY - 2004 DA - 2004// TI - The KEGG resource for deciphering the genome JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh063 DO - 10.1093/nar/gkh063 ID - Kanehisa2004 ER - TY - JOUR AU - Kanehisa, M. PY - 2006 DA - 2006// TI - From genomics to chemical genomics: new developments in KEGG JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj102 DO - 10.1093/nar/gkj102 ID - Kanehisa2006 ER - TY - JOUR AU - Tatusov, R. L. AU - Koonin, E. V. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - A genomic perspective on protein families JO - Science VL - 278 UR - https://doi.org/10.1126/science.278.5338.631 DO - 10.1126/science.278.5338.631 ID - Tatusov1997 ER - TY - JOUR AU - Tatusov, R. L. PY - 2003 DA - 2003// TI - The COG database: an updated version includes eukaryotes JO - BMC Bioinform VL - 4 UR - https://doi.org/10.1186/1471-2105-4-41 DO - 10.1186/1471-2105-4-41 ID - Tatusov2003 ER - TY - JOUR AU - Magrane, M. PY - 2011 DA - 2011// TI - UniProt Knowledgebase: a hub of integrated protein data JO - Database VL - 2011 UR - https://doi.org/10.1093/database/bar009 DO - 10.1093/database/bar009 ID - Magrane2011 ER - TY - JOUR AU - Ashburner, M. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The Gene Ontology Consortium JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Yu, K. AU - Zhang, T. PY - 2013 DA - 2013// TI - Construction of customized sub-databases from NCBI-nr database for rapid annotation of huge metagenomic datasets using a combined BLAST and MEGAN approach JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0059831 DO - 10.1371/journal.pone.0059831 ID - Yu2013 ER - TY - JOUR AU - Petersen, T. N. AU - Brunak, S. AU - Heijne, G. AU - Nielsen, H. PY - 2011 DA - 2011// TI - SignalP 4.0: discriminating signal peptides from transmembrane regions JO - Nat Methods VL - 8 UR - https://doi.org/10.1038/nmeth.1701 DO - 10.1038/nmeth.1701 ID - Petersen2011 ER - TY - JOUR AU - Jehl, M. A. AU - Arnold, R. AU - Rattei, T. PY - 2011 DA - 2011// TI - Effective—a database of predicted secreted bacterial proteins JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1154 DO - 10.1093/nar/gkq1154 ID - Jehl2011 ER - TY - JOUR AU - Kurtz, S. PY - 2004 DA - 2004// TI - Versatile and open software for comparing large genomes JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-2-r12 DO - 10.1186/gb-2004-5-2-r12 ID - Kurtz2004 ER - TY - JOUR AU - Chen, L. AU - Zheng, D. AU - Liu, B. AU - Yang, J. AU - Jin, Q. PY - 2016 DA - 2016// TI - VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkv1239 DO - 10.1093/nar/gkv1239 ID - Chen2016 ER - TY - JOUR AU - Krzywinski, M. PY - 2009 DA - 2009// TI - Circos: an information aesthetic for comparative genomics JO - Genome Res VL - 19 UR - https://doi.org/10.1101/gr.092759.109 DO - 10.1101/gr.092759.109 ID - Krzywinski2009 ER -