Table 1 Summary in genome annotation data for Clostridium perfringens strain Del1 and 3 reference strains: CP4, JP55 and ATCC13124
Genome annotation | Clostridium perfringens Strains | |||
|---|---|---|---|---|
DEL1 | CP4 | JP55 | ATCC13124 | |
Genome accession# | NZ_CP019576.1 (3559163 bp) | GCA_001414595.1 (latest) | NZ_CP010993.1 (3347300 bp) | NC_008261.1 (325666 bp) |
Sequence status | Complete genome | Contigs (98 contigs) | Complete genome | Complete genome |
Annotation date | 3/5/2017 | 04/04/2017 | 04/05/2017 | 04/06/2017 |
Assembly method | Celera Assembler & Genomics Workbench v. V. 9.5.1 | Velvet v. 0.7.48 | DNASTAR SeqMan v. NGEN12 | na |
Annotation method | Best-placed reference protein set; GeneMarks+ | Best-placed reference protein set; GeneMarks+ | Best-placed reference protein set; GeneMarks+ | Best-placed reference protein set; GeneMarks+ |
Annotation software revision | 4.1 | 4.1 | 4.1 | 4.1 |
Genes (total) | 3556 | 3394 | 3287 | 2948 |
CDS (chromosome) | 3361 | 3293 | 3064 | 2801 |
Genes (RNA) | 128 | 38 | 128 | 128 |
rRNAs | 10, 10, 10 (5S, 16S, 23S) | 1 (5S) | 10, 10, 10 (5S, 16S, 23S) | 8, 8, 8 (5S, 16S, 23S) |
tRNAs | 94 | 33 | 94 | 27 |
ncRNAs | 4 | 4 | 4 | 4 |
Pseudo genes (total) | 136 | 106 | 95 | 27 |