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Table 1 Summary in genome annotation data for Clostridium perfringens strain Del1 and 3 reference strains: CP4, JP55 and ATCC13124

From: Complete genome sequences of Clostridium perfringens Del1 strain isolated from chickens affected by necrotic enteritis

Genome annotation Clostridium perfringens Strains
DEL1 CP4 JP55 ATCC13124
Genome accession# NZ_CP019576.1 (3559163 bp) GCA_001414595.1 (latest) NZ_CP010993.1 (3347300 bp) NC_008261.1 (325666 bp)
Sequence status Complete genome Contigs (98 contigs) Complete genome Complete genome
Annotation date 3/5/2017 04/04/2017 04/05/2017 04/06/2017
Assembly method Celera Assembler & Genomics Workbench v. V. 9.5.1 Velvet v. 0.7.48 DNASTAR SeqMan v. NGEN12 na
Annotation method Best-placed reference protein set; GeneMarks+ Best-placed reference protein set; GeneMarks+ Best-placed reference protein set; GeneMarks+ Best-placed reference protein set; GeneMarks+
Annotation software revision 4.1 4.1 4.1 4.1
Genes (total) 3556 3394 3287 2948
CDS (chromosome) 3361 3293 3064 2801
Genes (RNA) 128 38 128 128
rRNAs 10, 10, 10 (5S, 16S, 23S) 1 (5S) 10, 10, 10 (5S, 16S, 23S) 8, 8, 8 (5S, 16S, 23S)
tRNAs 94 33 94 27
ncRNAs 4 4 4 4
Pseudo genes (total) 136 106 95 27