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Table 8 NoV GII strains genotyped with the capsid region of ORF2 from NoV-AGE patients in Pudong, Shanghai in 2014–2016

From: Molecular epidemiology of genogroup II norovirus infections in acute gastroenteritis patients during 2014–2016 in Pudong New Area, Shanghai, China

Genotype

Accession number of strains in this study

Quantity of strains

Strains in phylogenetic tree

GII.1

KU672081

1

KU672081

GII.2

KU672082, KU672083, KU672087, KY797735, KY983635-49

19

KU672087, U672082, KU672083, KY983635, KY983636, KY983637, KY983641, KY983643, KY983644, KY983647, KY983649, KY797735

GII.3

KU672088-92, KU672103-109, KY797764, KY983651-79

42

KU672103, KU672106, KU672107, KU672108, KU672088, KU672089, KU672090, KU672092, KY983651, KY983653, KY983654, KY983661, KY983668, KY983670, KY983671, KY983675, KY983677, KY983679, KY797764

GII.4

KU532332, KU532354-455, KU532676, KU532705-66, KY797698-725, KY983683-832

340

KU532440, KU532363, KU532368, KU532373, KU532376, KU532384

KU532386, KU532705, KU532709, KU532734, KU532758, KU532439, KU532441, KU532448, KU532454,

KU532455, KY983692, KY983695,

KY983704, KY983719, KY983728, KY983733, KY983737, KY983742, KY983747, KY983748, KY983750, KY983765, KY983798, KY983689, KY797711

GII.5

KU672135, KY797775

2

KU672135, KY797775

GII.6

KU672136, KU672149-59, KY797777, KY983833-39

20

KU672149, KU672151, KU672153, KU672156, KU672157, KU672158, KU672159, KU672136, KY983833, KY983835, KY983836, KY983838, KY983839, KY797777

GII.8

KU672163, KU672164, KY838340

3

KU672163, KU672164, KY983840

GII.12

KU672167, KU672168

2

KU672167

GII.13

KU672193-200, KU672170-177, KY983842-57, KY797778-81

36

KU672193, KU672194, KU672197, KU672200, KU672170, KU672171, KU672172, KU672173, KU672177, KY983842, KY983843, KY983845, KY983847, KY983850, KY983851, KY983853, KY983854, KY983856, KY797778

GII.14

KU532778, KU532779, KY983858

3

KU532778, KU532779, KY983858

GII.17

KU516833-966, KU516970-93, KU672203-331, KY797681-2, KY983864-961

387

KU516882, KU516947, KU516961, KU516979, KU516980, KU516881, KU672221, KU516883, KU672240, KU516922, KU516942, KU672318, KY983864, KY983868, KY983874, KY983875, KY983876, KY983879, KY983882, KY983887, KY983896, KY983908, KY983927, KY983941, KY983951, KY983956, KY983958, KY983961, KY797685

GII.21

KU532767-76, KY983962

11

KU532767, KU532768, KU532772, KU532776, KY983962

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Gut Pathogens

ISSN: 1757-4749