Table 2 Plasmidotyping results of strains used in this study
Strain | Plasmidotyping results by PCR analysis according to Franco et al. [22] | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
pESA3/p CTU1 incFIB | eit | iuc | Cdiuc | cpa | Δcpa | ΔT6SS | T6SS IntL | vgrG | T6SS R end | T6SS IntR | Δfha | fha | dfha | pESA2 IncF2 | pCTU3 H1 | zpx | |
7405-71-1A (Comp 11) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-68-2 (Comp 19) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-71-1B (Comp 20) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
867009 DFI106-1 (Comp 45) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
867009 RF106-1 (Comp 46) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-80-2 (Comp 49) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-68-4 (Comp 53) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-75-1 (Comp 54) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
844916-23 (Comp 55) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
7405-75-2 (Comp 57) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (–) | (+) |
0210ELJ 72-1 (Comp 59) | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (+) | (+) | (–) | (+) | (–) | ND | (–) | (+) | (+) |
CDC 1121-73 | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (+) | (+) | (+) | (–) | (+) | (–) | (–) | ND | ND | (+) |
GK 1025* | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (+) | (+) | (+) |
GK 1026* | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1027 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1028 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1029 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1030 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1034 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1035 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (+) | (–) | (+) | ND | ND | (–) | (–) | (+) |
GK 1326 | (+) | (+) | (+) | ND | (+) | (–) | ND | (+) | (–) | (–) | (–) | (+) | ND | ND | (–) | (–) | (+) |
E722 | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (+) | (–) | (+) | (–) | (+) | (–) | (–) | (–) | (–) | (+) |
H169/1/16 | (+) | (+) | (+) | ND | (+) | ND | ND | (+) | (–) | (+) | (–) | (+) | (–) | ND | (–) | (–) | ND |
Jor172 | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (+) | (–) | (–) | (–) | (+) | (–) | (–) | (–) | (–) | (+) |
C. universalis NCTC9529T | (+) | (+) | (+) | (–) | (+) | (–) | (+) | (–) | (–) | (–) | (–) | (–) | (+) | (–) | (–) | (–) | (+) |
C. condimenti LMG26250T | (+) | (+) | (+) | (+) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | ND | ND | (–) |
C. dublinensis subspp. dublinensis LMG23823T | (+) | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (+) | (–) | (–) | (+) |
C. malonaticus LMG23826T | (+) | (+) | (+) | (–) | (–) | (+) | (+) | (–) | (–) | (–) | (–) | (–) | (+) | (–) | (–) | (+) | (+) |
C. turicensis LMG23827T | (+) | (+) | (+) | (–) | (–) | (+) | (+) | (–) | (–) | (–) | (–) | (–) | (+) | (–) | (+) | (+) | (+) |
C. muytjensii 51329T | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (–) | (+) |
C. sakazakii BAA-894 | (+) | (+) | (+) | (–) | (+) | (–) | (–) | (+) | (+) | (+) | (+) | (+) | (–) | (–) | (+) | (–) | (+) |