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Table 3 Cronobacter strains studied using the FDA Cronobacter custom designed DNA microarray

From: Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples

Strain name

Species

Source

Serotype

MLST

LMG26520T

C. condimenti

Food, spiced sausage, Slovakia

ND

98

KW5

C. dublinensis

Food, black rice, Republic of Korea

Cdub O:1

ND

3_27

C. dublinensis

Food, nuts, Republic of Korea

Cdub O:1

ND

2_14

C. dublinensis

Food, nuts, Republic of Korea

Cdub O:1

ND

CFS237

C. dublinensis

Environmental, milk production facility, Ireland

Cdub O:1

106

Comp56

C. dublinensis

Environmental, compliance activity, USA

Cdub O:1

ND

5960_70

C. dublinensis

Clinical, blood

ND

5

SUN_1

C. dublinensis

Food, taro, Republic of Korea

ND

ND

6_3G

C. dublinensis

Food, nuts, Republic of Korea

Cdub O:1

ND

6_15G

C. dublinensis

Food, nuts, Republic of Korea

Cdub O:2

ND

464

C. dublinensis

Environmental, milk production facility

ND

79

E515C

C. dublinensis

Environmental, water fountain basin

Cdub O:2

80

J160

C. malonaticus

Environmental, vacuum dust, Jordan

Csak O:2

ND

J168B

C. malonaticus

Environmental, vacuum dust, Jordan

Csak O:2

ND

GK1349

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1354

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1355

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1356

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1357

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1358

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1360

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1510

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1512

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK1518

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

GK796A_2

C. malonaticus

PIF Facility; Hanover, Germany

Csak O:5

ND

Sh41g

C. malonaticus

Fly, Sarcophaga haemorrhoidalis, gut, USA

ND

ND

Md99g

C. malonaticus

Fly, Musca domestica, gut, USA

Cmal O:1

60

CI825

C. malonaticus

Clinical, breast abcess, USA

Cmal O:2

7

Md25g

C. malonaticus

Fly, Musca domestica, gut, USA

Cmal O:2

7

51329

C. muytjensii

Unknown

Cmuy O:2

81

J112

C. muytjensii

Food, liquorice, Jordan

ND

ND

GK1257

C. muytjensii

PIF Facility; Hanover, Germany

ND

ND

J171

C. muytjensii

Food, spices (Fennel), Jordan

ND

ND

GK1258

C. muytjensii

PIF Facility; Hanover, Germany

Csak O:1

ND

J174

C. muytjensii

Food, spices (Anise), Jordan

Cmuy O:1

ND

J176

C. muytjensii

Food, spices (Thyme), Jordan

ND

ND

J77

C. muytjensii

Food, spices (Anise), Jordan

Cmuy O:2

ND

J95

C. muytjensii

Food, spices (Anise), Jordan

ND

ND

J100

C. sakazakii

Food, semolina, Jordan

Csak O:2

ND

J103

C. sakazakii

Food, spices, Jordan

Csak O:2

ND

J109

C. sakazakii

Food, grapes, Jordan

Csak O:2

ND

J146

C. sakazakii

Food, liquorice, Jordan

Csak O:2

ND

GK1025

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

64

GK1027

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

64

J148

C. sakazakii

Food, spices, Jordan

Csak O:2

4

BAA894

C. sakazakii

PIF, USA

Csak O:1

1

GK1028

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

64

GK1030

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

64

GK1032

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

J151

C. sakazakii

Food, spices (Fennel), Jordan

Csak O:1

ND

J154

C. sakazakii

Food, spices, Jordan

Csak O:3

4

3_21

C. sakazakii

Food, nuts, Republic of Korea

Csak O:1

ND

GK1033

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1034

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

64

GK1035

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

64

GK1036

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1151

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:7

ND

GK1152

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1153

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

E654

C. sakazakii

Clinical, Ireland

Csak O:1

1

E657

C. sakazakii

Clinical, Ireland

Csak O:1

1

GK1154

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

E760

C. sakazakii

Clinical, Ireland

Csak O:2

264

GK1155

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

CDC1121_73

C. sakazakii

Clinical, bronchial wash, USA

Csak O:2

64

GK1156

C. sakazakii

PIF Facility, Hanover, Germany

Cmal O:2

ND

GK1157

C. sakazakii

PIF Facility; Hanover, Germany

Csak o:2

4

E772

C. sakazakii

Food, milk powder, France

Csak O:2

64

GK1158

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK1159

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

5_21G

C. sakazakii

Food, nuts, Republic of Korea

Csak O:2

ND

5_20G

C. sakazakii

Food, nuts, Republic of Korea

Csak O:2

ND

1_15

C. sakazakii

Food, nuts, Republic of Korea

Csak O:2

ND

KW10

C. sakazakii

Food, powdered pine needles, Republic of Korea

Csak O:2

ND

J172

C. sakazakii

Food, spices, Jordan

Csak O:2

ND

Es35

C. sakazakii

Clinical, Israel

Csak O:1

8

5_17G

C. sakazakii

Food, nuts, Republic of Korea

Csak O:1

ND

J173

C. sakazakii

Food, spices, Jordan

Csak O:1

ND

E755

C. sakazakii

Clinical, Ireland

Csak O:4

8

E758

C. sakazakii

Clinical, Ireland

Csak O:4

8

E756

C. sakazakii

Clinical, Ireland

Csak O:4

8

A48g

C. sakazakii

Fly, Anthimylidae, gut, USA

Csak O:6

221

E656

C. sakazakii

Clinical, Ireland

Csak O:1

8

J175

C. sakazakii

Food, spices, Jordan

Csak O:1

ND

2193_16_02

C. sakazakii

Food, nursery water, USA

Csak O:1

8

2193_16_02_2

C. sakazakii

Food, nursery water, USA

Csak O:1

8

2193_08

C. sakazakii

Food, nursery water, USA

Csak O:1

8

18_01

C. sakazakii

Patient, stool sample, USA

Csak O:1

4

18_05_03

C. sakazakii

Food, opened can of PIF, USA

Csak O:1

8

18_07

C. sakazakii

Patient, stool sample, USA

Csak O:1

8

29544T

C. sakazakii

Clinical (child), throat swab, USA

Csak O:1

8

701753

C. sakazakii

Environmental, PIF plant, USA

Csak O:2

31

KW11

C. sakazakii

Food, black bean, Republic of Korea

Csak O:4

ND

CI764

C. sakazakii

Clinical, Ireland

Csak O:4

12

GK1260

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

1

E837

C. sakazakii

Clinical, Ireland

Csak O:2

ND

J183

C. sakazakii

Food, spices, Jordan

Csak O:1

21

J20

C. sakazakii

Food, spices, Jordan

Csak O:1

ND

J204_2

C. sakazakii

Food, liquorice, Jordan

Csak O:7

223

J22

C. sakazakii

Food, spice (Chamomile), Jordan

Csak O:1

ND

J32

C. sakazakii

Food, baby food, Jordan

Csak O:3

ND

J44

C. sakazakii

Food, spices, Jordan

Csak O:1

ND

2156_3

C. sakazakii

Clinical, blood, USA

Csak O:3

4

GK1263B2

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK1264

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK1265

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1266A2

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1312

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1314

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1315

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1316

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:7

ND

GK1317

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1318

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1319

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1320

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1322

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1322A_2

C. sakazakii

PIF Facility; Hanover, Germany

ND

ND

GK1328B_2

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK1351

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

206 N

C. sakazakii

Clinical, Ireland

Csak O:2

4

306 N

C. sakazakii

Clinical, Ireland

Csak O:2

4

255 N

C. sakazakii

Clinical, Ireland

Csak O:2

4

E788

C. sakazakii

Clinical, Ireland

Csak O:2

4

GK1352

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

2193_03

C. sakazakii

Clinical, CSF, USA

Csak O:2

4

4_01C_5ug

C. sakazakii

Food, PIF

Csak O:2

218

E899

C. sakazakii

Clinical, USA

Csak O:2

4

2151

C. sakazakii

Clinical, USA

Csak O:2

4

GK1511

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

GK1513

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

2193_02

C. sakazakii

Clinical, sputum, USA

Csak O:2

4

9368_75

C. sakazakii

Unknown

Csak O:2

4

9369_75

C. sakazakii

Unknown

Csak O:4

4

GK1519

C. sakazakii

PIF Facility; Hanover, Germany

csak O:1

ND

GK1520

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

GK1521

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

GK1574

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:4

ND

J93

C. sakazakii

Food, spices, Jordan

Csak O:2

ND

E893

C. sakazakii

Clinical, Ireland

Csak O:2

4

GK1576

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

GK792_3

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:7

83

GK793

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

1

GK794

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:7

83

J96

C. sakazakii

Food, spices (Fennel), Jordan

Csak O:3

ND

GK797

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:7

ND

GK798

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK799AB_3F

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:7

83

GK800

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:7

83

GK801

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK951

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK952

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK954

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK956

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK958

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK959

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK960

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:1

ND

GK961

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

GK963_1

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

ND

GK964

C. sakazakii

PIF Facility; Hanover, Germany

Csak O:2

4

680

C. turicensis

Food, unspecified

ND

48

797

C. universalis

Environmental, water, UK

Cuni O:1

54

Md1 s

C. turicensis

Fly, Musca domestica, surface, USA

ND

7

2_15

C. turicensis

Food, nuts, Republic of Korea

ND

ND

Sh41 s

C. turicensis

Fly, Sarcophaga haemorrhoidalis, gut, USA

ND

ND

3_24

C. turicensis

Food, nuts, Republic of  Korea

Csak O:5

ND

5_15G

C. turicensis

Food, nuts, Republic of Korea

Csak O:5

ND

Comp12

C. turicensis

Environmental, compliance activity, USA

ND

24

Comp44

C. turicensis

Environmental, compliance activity, USA

ND

24

Comp66

C. turicensis

Environmental, compliance activity, USA

Ctur O:1

ND

3032

C. turicensis

Clinical (neonate), blood, Switz.

Ctur O:1

19

576

C. freundii

Unknown

ND

ND

CQ118

E. hormaechei

PIF Facility; Dublin Ireland

ND

ND

1159/04

F. helveticus

LMG 23733, fruit punch powder, Switz.

ND

ND

513/05T

F. helveticus

LMG 23732T, fruit punch powder, Switz.

ND

ND

1160/04

F. pulveris

LMG 24058, fruit punch powder, Switz.

ND

ND

601/05T

F. pulveris

LMG 24057T, fruit punch powder, Switz.

ND

ND

508/05T

S. turicensis

LMG 23730T, fruit punch powder, Switz.

ND

ND

214

K. pneumoniae

Unknown

ND

ND

SalSTM

Salmonella typhimurium

Unknown

ND

ND

GK1313

Non-Cronobacter

PIF Facility; Hanover, Germany

ND

ND

GK792_1

Non-Cronobacter

PIF Facility; Hanover, Germany

ND

ND

GK792_2

Non-Cronobacter

PIF Facility; Hanover, Germany

ND

ND

GK795

Non-Cronobacter

PIF Facility; Hanover, Germany

ND

ND

GK963_2

Non-Cronobacter

PIF Facility; Hanover, Germany

ND

ND