Table 2 Comparison of the features of Kocuria rhizophila genomes
Attributes | Kocuria rhizophila genomes | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
BT304 | DC2201 | FDAARGOS302 | G2 | D2 | 14ASP | P7-4 | TPW45 | RF | UMB0131 | |
Number of contigs | 1 | 1 | 1 | 87 | 34 | 183 | 54 | 46 | 90 | 8 |
Size (bp) | 2,763,150 | 2,697,540 | 2,697,877 | 2,881,857 | 2,636,961 | 2,698,103 | 2,820,331 | 2,701,701 | 2,778,506 | 2,833,440 |
GC (%) | 71.2 | 71.2 | 71.2 | 70.8 | 70.8 | 70.8 | 70.5 | 70.6 | 70.6 | 70.5 |
OrthoANIu (%) | – | 98.92 | 98.80 | 97.89 | 88.14 | 87.97 | 87.96 | 87.92 | 87.90 | 87.83 |
Resource | Bovine gut | Soil | N/A | Wall in slaughterhouse | Human feces | Soil | Fish gut | Freshwater | Soil | Human urine |
Virulence, disease and defense | 28 | 28 | 28 | 29 | 38 | 46 | 36 | 32 | 41 | 31 |
Resistance to fluoroquinolones | 4 | 4 | 4 | 4 | 4 | 5 | 4 | 4 | 4 | 4 |
Resistance to vancomycin | 1 | 1 | 1 | 1 | – | – | – | – | 1 | – |
Multidrug resistance efflux pumps | – | – | – | – | – | – | – | – | – | 2 |
Amino acid and derivatives | 345 | 356 | 356 | 350 | 322 | 351 | 318 | 316 | 323 | 318 |
BCAA biosynthesis | 20 | 19 | 19 | 20 | 20 | 24 | 21 | 20 | 20 | 20 |
BCAA degradation | 52 | 52 | 52 | 54 | 52 | 61 | 52 | 51 | 51 | 52 |