Table 2 Characteristics of CRISPR loci in all 16 CRISPR-positive V. parahaemolyticus isolates
From: Characterization and CRISPR-based genotyping of clinical trh-positive Vibrio parahaemolyticus
Isolate assigned | Gene harboring | Consensus direct repeats (CDRs) sequencesa | No. of DRs | No. of spacers | CRISPR locus pattern (bp)b |
|---|---|---|---|---|---|
PSU4921 | tdh+ trh1+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-31-28-31-28 |
PSU5105 | tdh+ trh1+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-31-28-31-28 |
PSU5106 | tdh+ trh1+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-31-28-31-28 |
PSU5107 | tdh+ trh1+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-31-28-31-28 |
PSU5264 | tdh+ trh1+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 2 | 1 | 28-33-28 |
PSU5296 | tdh+ trh1+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-31-28-31-28 |
PSU5322 | tdh+ trh1+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-30-28-31-28 |
1884 | tdh+ trh1+ | GTGAACTGCCGAATAGGTAGCTGATA | 2 | 1 | 26-31-26 |
1990 | tdh+ trh2+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 2 | 1 | 28-31-28 |
2475 | tdh+ trh2+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 2 | 1 | 28-32-28 |
2435 | tdh+ trh2+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-32-28-31-28 |
2443 | tdh+ trh2+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-31-28-31-28 |
2463 | tdh+ trh2+ | GTGAACTGCCGAATAGGTAGCTGAT | 3 | 2 | 25-31-25-31-25 |
PSU5256 | tdh− trh2+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-32-28-31-28 |
PSU5323 | tdh− trh2+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-30-28-31-28 |
PSU5331 | tdh− trh2+ | GTGAACTGCCGAATAGGTAGCTGATAAT | 3 | 2 | 28-30-28-31-28 |