Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg

Antony, Linto; Behr, Melissa; Sockett, Donald; Miskimins, Dale; Aulik, Nicole; Christopher-Hennings, Jane; Nelson, Eric; Allard, Marc W.; Scaria, Joy

doi:10.1186/s13099-018-0279-0

Gut Pathogens

Table 1 Features of outbreak associated Salmonella ser. Heidelberg strains

From: Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg

Assigned name	Biosample ID	Isolation location	Year	Host	Tissue	Lesions	safABCD
USA293	SAMN04240660	USA:IA	2015	Bovine	Lung, LN, intestine, kidney	Enteritis; lymphadenitis	+
USA420	SAMN06330648	USA:NE	2016	Bovine	Fecals	No tissues	+
USA520	SAMN03734290	USA:SD	2014	Bovine	Intestine, LN, liver	Ileitis	+
USA521	SAMN03734314	USA:SD	2014	Bovine	Lung, liver, intestine	Enteritis; lymphadenitis	+
USA522	SAMN05781470	USA:SD	2016	Bovine	Intestine, LN, liver, kidney	Villous atrophy	+
USA523	SAMN05781531	USA:SD	2016	Bovine	Intestine, abomasum	Enteritis	+
USA524	SAMN06330649	USA:SD	2016	Bovine	Intestine	No lesions	+
USA526	SAMN06648142	USA:SD	2016	Bovine	Intestine	No lesions, autolysis	+
USA585	SAMN08150382	USA:WI	2016	Bovine	Intestine, spleen, lung	Bronchopneumonia 3/5; lymphoid depletion	+
USA586	SAMN08150383	USA:WI	2016	Bovine	Intestine, LN, lung, bile, liver	Fibrinonecrotic enteritis	+
USA587	SAMN08150384	USA:WI	2016	Bovine	Intestine, Lung, LN	Mild enteritis; lymphoid depletion	+
USA588	SAMN08150385	USA:MN	2017	Bovine	Intestine, LN, lung, abomasum	Enteritis; lymphadenitis	+
USA084	SAMN06231053	USA	2016	bovine	N/A*	N/A*	+
USA089	SAMN05916660	USA	2016	bovine	N/A*	N/A*	+
USA099	SAMN06012648	USA	2016	bovine	N/A*	N/A*	+
USA397	SAMN05752003	USA:MN	2016	bovine	Fecals	N/A*	+
USA460	SAMN05710975	USA:NY	2016	bovine	Intestine	N/A*	+
USA538	SAMN05757192	USA:TX	2011	bovine	Comminuted beef	N/A*	+
USA582	SAMN05852396	USA:WV	2009	bovine	Raw ground beef	N/A*	+
USA114	SAMN06290379	USA	2016	Environmental	Swab	N/A*	+
USA115	SAMN06290384	USA	2016	Environmental	Swab	N/A*	+
USA116	SAMN06290387	USA	2016	Environmental	Swab	N/A*	+
USA117	SAMN06290388	USA	2016	Environmental	Swab	N/A*	+
USA074	SAMN05773458	USA	2015	Human	Stool	N/A*	+
USA080	SAMN05714563	USA	2015	Human	Stool	N/A*	+
USA094	SAMN05773457	USA	2016	Human	Urine	N/A*	+
USA104	SAMN06235037	USA	2016	Human	Blood	N/A*	+
USA107	SAMN07177558	USA	2016	Human	Blood	N/A*	+
USA113	SAMN06290389	USA	2016	Human	Blood	N/A*	+
USA120	SAMN06688282	USA	2017	Human	Stool	N/A*	+
USA088	SAMN05916659	USA	2016	Other	Intestine	N/A*	+
USA303	SAMN07611477	USA:IL	2017	Porcine	Raw ground pork	N/A*	+

A comparison of virulence factors safA, safB, safC and safD as well as pathologic findings between newly sequenced bovine isolates and other members of cluster bovine
N/A* data not available

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ISSN: 1757-4749

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