Table 1 Closest nucleotide sequences of 11 rotavirus genes identified using NCBI nucleotide BLAST
Gene | Specimen no. | Closest sequence at NCBI | % identity with the closest sequence | Description of the closest sequence |
|---|---|---|---|---|
VP7 | RN-001–020 | FJ603447 | 99 | GILL3-8/KOR/2008/G4P[6] |
VP4 | RN-001–020 | AY158093 | 96 | SG2 KRV01/KOR/2002/G2P[6] |
VP6 | RN-001–018, RN-020 | KJ752030 | 97 | Human-wt//ETH/MRC-DPRU1843/2009/G1P[8] |
| Â | RN-019 | LC105194 | 100 | Human-wt/JPN/MU14-18/2014/G1P[8] |
VP1 | RN-001–018, RN-020 | JQ863309 | 96–97 | Human-tc/IDN/57M/1980/G4P[10] |
| Â | RN-019 | KP645333 | 99 | Human-wt/AUS/2011/G1P[8] |
VP2 | RN-001–018, RN-020 | KT223476 | 98 | Human-wt/BEL/2002/G1P[8] |
| Â | RN-019 | LC105207 | 99 | Human-wt/JPN/MU14-18/2014/G1P[8] |
VP3 | RN-001–018, RN-020 | KT694941 | 96 | Human-wt/USA/Wa/1974/G1P[8] |
| Â | RN-019 | LC105208 | 99 | Human-wt/JPN/MU14-19/2014/G1P[8] |
NSP1 | RN-001–018, RN-020 | KC579614 | 95 | Human-wt/USA/DC1164/1978/G1P[8] |
| Â | RN-019 | LC105209 | 99 | Human-wt/JPN/MU14-19/2014/G1P[8] |
NSP2 | RN-001–018, RN-020 | JQ863316 | 99 | Human-tc/IDN/57M/1980/G4P[10] |
| Â | RN-019 | LC105210 | 99 | Human-wt/JPN/MU14-19/2014/G1P[8] |
NSP3 | RN-001–020 | LC105211 | 99–100 | Human-wt/JPN/MU14-19/2014/G1P[8] |
NSP4 | RN-001–018, RN-020 | AF260930 | 97 | 94’SZ1/China |
| Â | RN-019 | KP645342 | 99 | Human-wt/AUS/CK00110/2011/G1P[8] |
NSP5/6 | RN-001, 002, 007, 008, 009, 010, 018 | KC580600 | 97 | Human-wt/USA/DC2956/1988/G1P[8] |
| Â | RN-003, 004, 005, 006, 011, 012, 013, 014, 015, 016, 017, 020 | AB091353 | 97 | Human/87H134/G1 |
| Â | RN-019 | KP645343 | 100 | Human-wt/AUS/CK00110/2011/G1P[8] |