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Table 1 Closest nucleotide sequences of 11 rotavirus genes identified using NCBI nucleotide BLAST

From: Whole-genome analysis of rotavirus G4P[6] strains isolated from Korean neonates: association of Korean neonates and rotavirus P[6] genotypes

Gene Specimen no. Closest sequence at NCBI % identity with the closest sequence Description of the closest sequence
VP7 RN-001–020 FJ603447 99 GILL3-8/KOR/2008/G4P[6]
VP4 RN-001–020 AY158093 96 SG2 KRV01/KOR/2002/G2P[6]
VP6 RN-001–018, RN-020 KJ752030 97 Human-wt//ETH/MRC-DPRU1843/2009/G1P[8]
  RN-019 LC105194 100 Human-wt/JPN/MU14-18/2014/G1P[8]
VP1 RN-001–018, RN-020 JQ863309 96–97 Human-tc/IDN/57M/1980/G4P[10]
  RN-019 KP645333 99 Human-wt/AUS/2011/G1P[8]
VP2 RN-001–018, RN-020 KT223476 98 Human-wt/BEL/2002/G1P[8]
  RN-019 LC105207 99 Human-wt/JPN/MU14-18/2014/G1P[8]
VP3 RN-001–018, RN-020 KT694941 96 Human-wt/USA/Wa/1974/G1P[8]
  RN-019 LC105208 99 Human-wt/JPN/MU14-19/2014/G1P[8]
NSP1 RN-001–018, RN-020 KC579614 95 Human-wt/USA/DC1164/1978/G1P[8]
  RN-019 LC105209 99 Human-wt/JPN/MU14-19/2014/G1P[8]
NSP2 RN-001–018, RN-020 JQ863316 99 Human-tc/IDN/57M/1980/G4P[10]
  RN-019 LC105210 99 Human-wt/JPN/MU14-19/2014/G1P[8]
NSP3 RN-001–020 LC105211 99–100 Human-wt/JPN/MU14-19/2014/G1P[8]
NSP4 RN-001–018, RN-020 AF260930 97 94’SZ1/China
  RN-019 KP645342 99 Human-wt/AUS/CK00110/2011/G1P[8]
NSP5/6 RN-001, 002, 007, 008, 009, 010, 018 KC580600 97 Human-wt/USA/DC2956/1988/G1P[8]
  RN-003, 004, 005, 006, 011, 012, 013, 014, 015, 016, 017, 020 AB091353 97 Human/87H134/G1
  RN-019 KP645343 100 Human-wt/AUS/CK00110/2011/G1P[8]
  1. NCBI National Center for Biotechnology Information, BLAST Basic Local Alignment Search Tool