Table 2 Rotavirus genotype constellations and nucleotide sequence identities of each gene of G4P[6] rotaviruses detected in this study and G4P[6] strains reported in other countries and Korean P[6] strains with whole-genome sequences
Strains | Genotype (% identity with the same gene of this study RN-001) | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
VP7 | VP4 | VP6 | VP1 | VP2 | VP3 | NSP1 | NSP2 | NSP3 | NSP4 | NSP5/6 | |
This study RN-001 2013 G4P[6] | G4 (100) | P[6] (100) | I1 (100) | R1 (100) | C1 (100) | M1 (100) | A1 (100) | N1 (100) | T1 (100) | E1 (100) | H1 (100) |
This study RN-002 2013 G4P[6] | G4 (100) | P[6] (100) | I1 (99) | R1 (99) | C1 (100) | M1 (100) | A1 (100) | N1 (99) | T1 (100) | E1 (100) | H1 (100) |
This study RN-003 2013 G4P[6] | G4 (99) | P[6] (99) | I1 (100) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (99) | H1 (99) |
This study RN-004 2013 G4P[6] | G4 (99) | P[6] (99) | I1 (100) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (100) | H1 (99) |
This study RN-005 2013 G4P[6] | G4 (99) | P[6] (99) | I1 (100) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (100) | H1 (99) |
This study RN-006 2013 G4P[6] | G4 (98) | P[6] (99) | I1 (100) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (100) | H1 (99) |
This study RN-007 2013 G4P[6] | G4 (99) | P[6] (99) | I1 (100) | R1 (99) | C1 (100) | M1 (99) | A1 (99) | N1 (100) | T1 (100) | E1 (100) | H1 (99) |
This study RN-008 2013 G4P[6] | G4 (99) | P[6] (99) | I1 (100) | R1 (99) | C1 (100) | M1 (99) | A1 (100) | N1 (99) | T1 (99) | E1 (100) | H1 (99) |
This study RN-009 2013 G4P[6] | G4 (99) | P[6] (100) | I1 (100) | R1 (99) | C1 (100) | M1 (100) | A1 (100) | N1 (100) | T1 (100) | E1 (100) | H1 (100) |
This study RN-010 2013 G4P[6] | G4 (99) | P[6] (99) | I1 (100) | R1 (99) | C1 (100) | M1 (99) | A1 (100) | N1 (99) | T1 (99) | E1 (100) | H1 (99) |
This study RN-011 2013 G4P[6] | G4 (99) | P[6] (99) | I1 (100) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (99) | H1 (99) |
This study RN-012 2014 G4P[6] | G4 (99) | P[6] (99) | I1 (100) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (99) | H1 (99) |
This study RN-013 2014 G4P[6] | G4 (99) | P[6] (99) | I1 (99) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (100) | H1 (99) |
This study RN-014 2014 G4P[6] | G4 (99) | P[6] (99) | I1 (99) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (100) | H1 (99) |
This study RN-015 2014 G4P[6] | G4 (99) | P[6] (99) | I1 (99) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (99) | H1 (99) |
This study RN-016 2013 G4P[6] | G4 (99) | P[6] (98) | I1 (99) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (99) | H1 (99) |
This study RN-017 2015 G4P[6] | G4 (99) | P[6] (98) | I1 (99) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (99) | H1 (99) |
This study RN-018 2015 G4P[6] | G4 (98) | P[6] (99) | I1 (99) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (99) | H1 (100) |
This study RN-019 2016 G4P[6] | G4 (99) | P[6] (99) | I1 (95) | R1 (93) | C1 (93) | M1 (91) | A1 (84) | N1 (92) | T1 (95) | E1 (93) | H1 (96) |
This study RN-020 2014 G4P[6] | G4 (99) | P[6] (99) | I1 (99) | R1 (99) | C1 (99) | M1 (99) | A1 (99) | N1 (99) | T1 (99) | E1 (100) | H1 (99) |
RVA/Human tc/GBR/ST3/1975/G4P2A[6] | G4 (96) | P[6] (95) | I1 (96) | R1 (94) | C1 (94) | M1 (91) | A1 (84) | N1 (90) | T1 (95) | E1 (95) | H1 (96) |
RVA/Human wt/CHN/E931/2008/G4P[6] | G4 (86) | P[6] (90) | I1 (91) | R1 (88) | C1 (88) | M1 (85) | A8 (78) | N1 (89) | T1 (89) | E1 (94) | H1 (94) |
RVA/Human wt/CHN/GX54/2010/G4P[6] | G4 (87) | P[6] (91) | I1 (91) | R1 (87) | C1 (87) | M1 (87) | A8 (77) | N1 (88) | T1 (90) | E1 (93) | H1 (93) |
RVA/Human wt/CHN/GX77/2010/G4P[6] | G4 (87) | P[6] (91) | I1 (91) | R1 (87) | C1 (87) | M1 (87) | A8 (77) | N1 (88) | T1 (90) | E1 (93) | H1 (93) |
RVA/Human wt/CHN/GX82/2010/G4P[6] | G4 (87) | P[6] (91) | I1 (91) | R1 (87) | C1 (87) | M1 (87) | A8 (77) | N1 (88) | T1 (90) | E1 (93) | H1 (93) |
RVA/Human wt/CHN/R479/2004/G4P[6] | G4 (86) | P[6] (91) | I5 (84) | R1 (88) | C1 (89) | M1 (87) | A1 (80) | N1 (89) | T7 (84) | E1 (91) | H1 (91) |
RVA/Human wt/CHN/R1954/2013/G4P[6] | G4 (87) | P[6] (91) | I1 (91) | R1 (88) | C1 (88) | M1 (87) | A8 (77) | N1 (91) | T1 (88) | E1 (93) | H1 (93) |
RVA/Human wt/THA/CMH-N014-11/2011/G4P[6] | G4 (86) | P[6] (90) | I5 (84) | R1 (85) | C1 (88) | M1 (85) | A8 (76) | N1 (89) | T1 (88) | E1 (90) | H1 (96) |
RVA/Human wt/THA/CMH-N016-10/2010/G4P[6] | G4 (86) | P[6] (90) | I1 (88) | R1 (86) | C1 (88) | M1 (86) | A8 (76) | N1 (89) | T1 (87) | E1 (91) | H1 (96) |
RVA/Human-wt/LKA/R1207/2009/G4P[6] | G4 (84) | P[6] (91) | I1 (91) | R1 (86) | C1 (88) | M1 (87) | A1 (81) | N1 (93) | T1 (89) | E1 (89) | H1 (94) |
RVA/Human wt/IND/mani 362/2007/G4P[6] | G4 (85) | P[6] (87) | I1 (90) | R1 (85) | C1 (85) | M1 | A8 (77) | N1 (91) | T1 (93) | E1 (94) | H1 (96) |
RVA/Human wt/ARG/Arg4605/2006/G4P[6] | G4 (87) | P[6] (90) | I1 (90) | R1 (85) | C1 (88) | M1 (88) | A8 (78) | N1 (89) | T7 (82) | E1 (91) | H1 (91) |
RVA/Human wt/ARG/Arg4671/2006/G4P[6] | G4 (83) | P[6] (91) | I1 (90) | R1 (87) | C1 (87) | M1 (88) | A8 (79) | N1 (89) | T1 (87) | E1 (91) | H1 (91) |
RVA/Human wt/HUN/BP271/2000/G4P[6] | G4 (83) | P[6] (86) | I1 (83) | R1 (87) | C1 (87) | M1 (88) | A8 (77) | N1 (87) | T7 (83) | E1 (90) | H1 (90) |
RVA/Human wt/HUN/BP1125/2004/G4P[6] | G4 (85) | P[6] (85) | I1 (85) | R1 (87) | C1 (88) | M1 (88) | A8 (77) | N1 (90) | T7 (89) | E1 (89) | H1 (89) |
RVA/Human wt/HUN/BP1227/2002/G4P[6] | G4 (84) | P[6] (85) | I1 (92) | R1 (87) | C1 (88) | M1 (88) | A1 (81) | N1 (90) | T1 (89) | E1 (89) | H1 (95) |
RVA/Human wt/HUN/BP1231/2002/G4P[6] | G4 (84) | P[6] (86) | I1 (91) | R1 (87) | C1 (88) | M1 (88) | A1 (81) | N1 (92) | T1 (88) | E1 (89) | H1 (95) |
RVA/Human wt/HUN/BP1490/1994/G4P[6] | G4 (84) | P[6] (85) | I1 (91) | R1 (88) | C1 (88) | M1 (89) | A1 (80) | N1 (89) | T7 (83) | E1 (90) | H1 (90) |
RVA/Human wt/HUN/BP1547/2005/G4P[6] | G4 (84) | P[6] (85) | I5 (84) | R1 (87) | C1 (87) | M1 (87) | A8 (76) | N1 (90) | T7 (82) | E1 (89) | H1 (89) |
RVA/Human wt/HUN/BP1792/2004/G4P[6] | G4 (82) | P[6] (86) | I1 (91) | R1 (87) | C1 (87) | M1 (89) | A1 (81) | N1 (91) | T7 (83) | E1 (89) | H1 (89) |
RVA/Human wt/HUN/BP1901/1991/G4P[6] | G4 (82) | P[6] (85) | I1 (91) | R1 (87) | C1 (88) | M1 (89) | A1 (81) | N1 (89) | T7 (82) | E1 (90) | H1 (90) |
RVA/Human wt/COD/KisB332/2008/G4P[6] | G4 (96) | P[6] (86) | I1 (89) | R1 (85) | C1 (88) | M1 (88) | A1 (85) | N1 (90) | T7 (83) | E1 (89) | H1 (89) |
RVA/Human/NCA/OL/2010/G4P[6] | G4 (94) | P[6] (84) | I1 (89) | R1 (85) | C1 (89) | M1 (85) | A8 (77) | N1 (88) | T7 (83) | E1 (87) | H1 (87) |
RVA/Human wt/PRY/1809SR/2009/G4P[6] | G4 (83) | P[6] (90) | I1 (91) | R1 (87) | C1 (87) | M1 (89) | A8 (79) | N1 (88) | T7 (83) | E1 (92) | H1 (92) |
RVA/Human-wt/ZMB/MRC-DPRU1752/G4P[6] | G4 (87) | P[6] (93) | I2 (78) | R2 (79) | C2 (81) | M2 (85) | A2 (76) | N2 (82) | T2 (78) | E2 (82) | H2 (84) |
RVA/Human wt/KOR/CAU 195/2006/G12P[6] | G12 (73) | P[6] (93) | I1 (96) | R1 (93) | C1 (92) | M1 (91) | A1 (84) | N1 (92) | T1 (94) | E1 (93) | H1 (96) |
RVA/Human wt/KOR/CAU 214/2006/G12P[6] | G12 (72) | P[6] (93) | I1 (96) | R1 (93) | C1 (92) | M1 (91) | A1 (84) | N1 (92) | T1 (94) | E1 (93) | H1 (96) |