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Table 2 Prophage content of S. flexneri (FC906) analyzed using PHAST tool

From: Complete genome analysis of clinical Shigella strains reveals plasmid pSS1653 with resistance determinants: a triumph of hybrid approach

Region Length (Kb) CDS GC content (%) Position Completenessa Possible phagesb Accession number
1 22.5 9 45.02 609,158–631,696 Incomplete Bacillus_Blue (3) NC_031056
2 19 19 51.73 1,558,706–1,577,795 Intact Enterobacteria_UAB_Phi20 (10) NC_031019
3 35.4 30 47.11 1,631,678–1,667,092 Intact Shigella_SfII (11) NC_021857
4 70 64 51.98 2,016,293–2,086,335 Intact Phage_Gifsy_1 (15) NC_010392
5 46.6 38 49.23 2,213,449–2,260,088 Intact Salmonella_118970_sal3 (5) NC_031940
6 36.1 27 48.89 2,408,721–2,444,902 Incomplete Salmonella_SJ46 (2) NC_031129
7 15.7 24 50.80 2,540,849–2,556,550 Questionable Geobac_E2 (3) NC_009552
8 55.4 67 49.55 2,749,711–2,805,160 Intact Salmonella_SJ46 (7) NC_031129
9 14 22 48.79 2,947,521–2,961,586 Incomplete Enterobacteria_933 W (3) NC_000924
10 6.9 7 49.11 3,195,314–3,202,254 Incomplete Shigella_SfIV (1) NC_022749
11 30.9 43 52.60 3,290,710–3,321,696 Intact Enterobacteria_mEp460 (13) NC_019716
12 29.9 26 47.50 3,416,333–3,446,293 Questionable Shigella_SfII (3) NC_021857
13 17.5 27 51.59 3,449,797–3,467,310 Intact Stx2_c_1717 (6) NC_011357
14 44.5 27 51.58 3,573,186–3,617,688 Intact Enterobacteria_P1 (3) NC_005856
15 9.6 11 50.59 4,048,439–4,058,064 Questionable Aeromonas_vB_AsaM_56 (4) NC_019527
  1. aPrediction of prophage region, intact (score > 90), questionable (score 70–90) or incomplete (score < 70)
  2. bPhage with the highest number of proteins most similar to those in the region