Complete genome analysis of clinical Shigella strains reveals plasmid pSS1653 with resistance determinants: a triumph of hybrid approach

Table 2 Prophage content of S. flexneri (FC906) analyzed using PHAST tool

Region	Length (Kb)	CDS	GC content (%)	Position	Completeness^a	Possible phages^b	Accession number
1	22.5	9	45.02	609,158–631,696	Incomplete	Bacillus_Blue (3)	NC_031056
2	19	19	51.73	1,558,706–1,577,795	Intact	Enterobacteria_UAB_Phi20 (10)	NC_031019
3	35.4	30	47.11	1,631,678–1,667,092	Intact	Shigella_SfII (11)	NC_021857
4	70	64	51.98	2,016,293–2,086,335	Intact	Phage_Gifsy_1 (15)	NC_010392
5	46.6	38	49.23	2,213,449–2,260,088	Intact	Salmonella_118970_sal3 (5)	NC_031940
6	36.1	27	48.89	2,408,721–2,444,902	Incomplete	Salmonella_SJ46 (2)	NC_031129
7	15.7	24	50.80	2,540,849–2,556,550	Questionable	Geobac_E2 (3)	NC_009552
8	55.4	67	49.55	2,749,711–2,805,160	Intact	Salmonella_SJ46 (7)	NC_031129
9	14	22	48.79	2,947,521–2,961,586	Incomplete	Enterobacteria_933 W (3)	NC_000924
10	6.9	7	49.11	3,195,314–3,202,254	Incomplete	Shigella_SfIV (1)	NC_022749
11	30.9	43	52.60	3,290,710–3,321,696	Intact	Enterobacteria_mEp460 (13)	NC_019716
12	29.9	26	47.50	3,416,333–3,446,293	Questionable	Shigella_SfII (3)	NC_021857
13	17.5	27	51.59	3,449,797–3,467,310	Intact	Stx2_c_1717 (6)	NC_011357
14	44.5	27	51.58	3,573,186–3,617,688	Intact	Enterobacteria_P1 (3)	NC_005856
15	9.6	11	50.59	4,048,439–4,058,064	Questionable	Aeromonas_vB_AsaM_56 (4)	NC_019527

^aPrediction of prophage region, intact (score > 90), questionable (score 70–90) or incomplete (score < 70)
^bPhage with the highest number of proteins most similar to those in the region

ISSN: 1757-4749