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Table 1 List of primers used in this study

From: Characterization of Arcobacter strains isolated from human stool samples: results from the prospective German prevalence study Arcopath

Primer

Sequence (5′-3′)

Product size (bp)

References

Genotyping

 ERIC 1R

ATG TAA GCT CCT GGG GAT TCA C

 

Houf et al. [21]

 ERIC 2

AAG TAA GTG ACT GGG GTG AGC G

 

Houf et al. [21]

Detection of putative virulence genes

 cadF-F

TTA CTC CTA CAC CGT AGT

283

Douidah et al. [25]

 cadF-R

AAA CTA TGC TAA CGC TGG TT

 

Douidah et al. [25]

 irgA-F

TGC AGA GGA TGC TTG GAG CGT AAC T

437

Whiteduck-Leveillee et al. [40]

 irgA-R

GTA TAA CCC CAT TGA TGA GGA GCA

 

Whiteduck-Leveillee et al. [40]

 hecA-F

GTG GAA GTA CAA CGA TAG CAG GCT C

537

Whiteduck-Leveillee et al. [40]

 hecA-R

GTC TGT TTT AGT TGC TCT GCA GTC

 

Whiteduck-Leveillee et al. [40]

 hecB-F

CTA AAC TCT ACA AAT CGT GC

528

Whiteduck-Leveillee et al. [40]

 hecB-R

CTT TTG AGT GTT GAC CTC

 

Whiteduck-Leveillee et al. [40]

 pldA-F

TTG ACG AGA CAA TAA GTG CAG C

293

Whiteduck-Leveillee et al. [40]

 pldA-R

CGT CTT TAT CTT TGC TTT CAG GGA

 

Whiteduck-Leveillee et al. [40]

 ciaB-F

TGG GCA GAT GTG GAT AGA GCT TGG A

284

Whiteduck-Leveillee et al. [40]

 ciaB-R

TAG TGC TGG TCG TCC CAC ATA AAG

 

Whiteduck-Leveillee et al. [40]

 cj1349-F

CCA GAA ATC ACT GGC TTT TGA G

659

Whiteduck-Leveillee et al. [40]

 cj1349-R

GGG CAT AAG TTA GAT GAG GTT CC

 

Whiteduck-Leveillee et al. [40]

 tlyA-F

CAA AGT CGA AAC AAA GCG ACT G

230

Whiteduck-Leveillee et al. [40]

 tlyA-R

TCC ACC AGT GCT ACT TCC TAT A

 

Whiteduck-Leveillee et al. [40]

 mviN-F

TGC ACT TGT TGC AAA ACG GTG

294

Whiteduck-Leveillee et al. [40]

 mviN-R

TGC TGA TGG AGC TTT TAC GCA AGC

 

Whiteduck-Leveillee et al. [40]

 iroE-F

AAT GGC TAT GAT GTT GTT TAC

415

Karadas et al. [11]

 iroE-R

TTG CTG CTA TGA AGT TTT

 

Karadas et al. [11]

Detection of putative virulence genes with A. lanthieri specific primers

 AL_cdtB F

GCA AAA GGT GAT TGG GCT CC

303

Zambri et al. [16]

 AL_cdtB R

TCC TCC AGC TCC TTG AAC AC

 

Zambri et al. [16]

 AL_cadF F

TCC AAC TCC AGT TGC TGC TC

243

Zambri et al. [16]

 AL_cadF R

TGT CCT TCG ATG TCA GCT TTC

 

Zambri et al. [16]

 AL_irgA F

AGA GCT GTT GGT TGG GAT GG

186

Zambri et al. [16]

 AL_irgA R

TGC ATT TGC TCT TGT AGG GT

 

Zambri et al. [16]

 AL_cdtC F

GAT GAA TCC ACC AGA AAT AGA G

196

Zambri et al. [16]

 AL_cdtC R

TTT GGG ATC AAG AGT ATA AAG TTC

 

Zambri et al. [16]

 AL_pldA F

TGC TCC ATT TAG AGA AAC TAA C

132

Zambri et al. [16]

 AL_pldA R

GAA CGA GAT TCT TCA CCA TCT T

 

Zambri et al. [16]

 AL_cdtA F

CAG GAA TAG ATC TCG CTA CAA ATG

220

Zambri et al. [16]

 AL_cdtA R

TTT GGT AGA AGA GGA AGT TCA TTG

 

Zambri et al. [16]

 AL_mviN F

ACC TTT GGT TCT TCA ACT TTA C

170

Zambri et al. [16]

 AL_mviN R

CGT GCT ACC ATA GGA AAT AGG

 

Zambri et al. [16]

 AL_ciaB F

GAT AGA TGC TAT TCT GCT CTT G

207

Zambri et al. [16]

 AL_ciaB R

ATC TTC ACT AAA TGC TAC TAT T

 

Zambri et al. [16]

 AL_tlyA F

GAC ATT GTA ACA TGT GAT GTA TCT T

125

Zambri et al. [16]

 AL_tlyA R

TTT ACA TTT GTT CCC ACT TCA AA

 

Zambri et al. [16]