Primer | Sequence (5′-3′) | Product size (bp) | References |
---|---|---|---|
Genotyping | |||
ERIC 1R | ATG TAA GCT CCT GGG GAT TCA C | Houf et al. [21] | |
ERIC 2 | AAG TAA GTG ACT GGG GTG AGC G | Houf et al. [21] | |
Detection of putative virulence genes | |||
cadF-F | TTA CTC CTA CAC CGT AGT | 283 | Douidah et al. [25] |
cadF-R | AAA CTA TGC TAA CGC TGG TT | Douidah et al. [25] | |
irgA-F | TGC AGA GGA TGC TTG GAG CGT AAC T | 437 | Whiteduck-Leveillee et al. [40] |
irgA-R | GTA TAA CCC CAT TGA TGA GGA GCA | Whiteduck-Leveillee et al. [40] | |
hecA-F | GTG GAA GTA CAA CGA TAG CAG GCT C | 537 | Whiteduck-Leveillee et al. [40] |
hecA-R | GTC TGT TTT AGT TGC TCT GCA GTC | Whiteduck-Leveillee et al. [40] | |
hecB-F | CTA AAC TCT ACA AAT CGT GC | 528 | Whiteduck-Leveillee et al. [40] |
hecB-R | CTT TTG AGT GTT GAC CTC | Whiteduck-Leveillee et al. [40] | |
pldA-F | TTG ACG AGA CAA TAA GTG CAG C | 293 | Whiteduck-Leveillee et al. [40] |
pldA-R | CGT CTT TAT CTT TGC TTT CAG GGA | Whiteduck-Leveillee et al. [40] | |
ciaB-F | TGG GCA GAT GTG GAT AGA GCT TGG A | 284 | Whiteduck-Leveillee et al. [40] |
ciaB-R | TAG TGC TGG TCG TCC CAC ATA AAG | Whiteduck-Leveillee et al. [40] | |
cj1349-F | CCA GAA ATC ACT GGC TTT TGA G | 659 | Whiteduck-Leveillee et al. [40] |
cj1349-R | GGG CAT AAG TTA GAT GAG GTT CC | Whiteduck-Leveillee et al. [40] | |
tlyA-F | CAA AGT CGA AAC AAA GCG ACT G | 230 | Whiteduck-Leveillee et al. [40] |
tlyA-R | TCC ACC AGT GCT ACT TCC TAT A | Whiteduck-Leveillee et al. [40] | |
mviN-F | TGC ACT TGT TGC AAA ACG GTG | 294 | Whiteduck-Leveillee et al. [40] |
mviN-R | TGC TGA TGG AGC TTT TAC GCA AGC | Whiteduck-Leveillee et al. [40] | |
iroE-F | AAT GGC TAT GAT GTT GTT TAC | 415 | Karadas et al. [11] |
iroE-R | TTG CTG CTA TGA AGT TTT | Karadas et al. [11] | |
Detection of putative virulence genes with A. lanthieri specific primers | |||
AL_cdtB F | GCA AAA GGT GAT TGG GCT CC | 303 | Zambri et al. [16] |
AL_cdtB R | TCC TCC AGC TCC TTG AAC AC | Zambri et al. [16] | |
AL_cadF F | TCC AAC TCC AGT TGC TGC TC | 243 | Zambri et al. [16] |
AL_cadF R | TGT CCT TCG ATG TCA GCT TTC | Zambri et al. [16] | |
AL_irgA F | AGA GCT GTT GGT TGG GAT GG | 186 | Zambri et al. [16] |
AL_irgA R | TGC ATT TGC TCT TGT AGG GT | Zambri et al. [16] | |
AL_cdtC F | GAT GAA TCC ACC AGA AAT AGA G | 196 | Zambri et al. [16] |
AL_cdtC R | TTT GGG ATC AAG AGT ATA AAG TTC | Zambri et al. [16] | |
AL_pldA F | TGC TCC ATT TAG AGA AAC TAA C | 132 | Zambri et al. [16] |
AL_pldA R | GAA CGA GAT TCT TCA CCA TCT T | Zambri et al. [16] | |
AL_cdtA F | CAG GAA TAG ATC TCG CTA CAA ATG | 220 | Zambri et al. [16] |
AL_cdtA R | TTT GGT AGA AGA GGA AGT TCA TTG | Zambri et al. [16] | |
AL_mviN F | ACC TTT GGT TCT TCA ACT TTA C | 170 | Zambri et al. [16] |
AL_mviN R | CGT GCT ACC ATA GGA AAT AGG | Zambri et al. [16] | |
AL_ciaB F | GAT AGA TGC TAT TCT GCT CTT G | 207 | Zambri et al. [16] |
AL_ciaB R | ATC TTC ACT AAA TGC TAC TAT T | Zambri et al. [16] | |
AL_tlyA F | GAC ATT GTA ACA TGT GAT GTA TCT T | 125 | Zambri et al. [16] |
AL_tlyA R | TTT ACA TTT GTT CCC ACT TCA AA | Zambri et al. [16] |