Strain no. | Genotyping/phylogeny | Resistance gene detection | Antibiotic susceptibility testing | Plasmid content analyses | Virulence gene detection | ||||
---|---|---|---|---|---|---|---|---|---|
E. coli phylogenetic groupa | Multilocus sequence type (ST)b | complex type (CT)b | Resistance genes PCR | Resistance genes ResFinderc | Resistance to antibioticsd | Replicon prediction with PlasmidFinderc | Plasmid sizes S1-PFGEe | Virulence gene {protein function} VirulenceFinderc | |
803-18 | B1 | ST155 | CT7500 | blaTEM, mcr-1-like | blaTEM-1B, mcr-1-like, aadA17-like, strA-like,strB-like, tetA, sul2, dfrA14-like, lnuF | AMP, PIP, CST, STRf, NALf, MOX, CIP, TETf, SXT | IncFIC(FII), IncFIB(AP001918), IncI1, IncX4, ColRNAI, Col(MG828) | 33 kb, 90 kb, 100 kb | gad{glutamate decarboxylase}, iroN{enterobactin siderophore receptor protein}, iss{increased serum survival}, lpfA{long polar fimbriae} |
844-18 | D | ST69 | CT7508 | blaTEM, mcr-1-like | blaTEM-1B, mcr-1-like, aadA1, mph(B), dfrA1, tetA, sul1, catA1-like | AMP, PIP, CST, NALf, MOX, CIP, TETf, CMP, SXT | IncFII, IncFIB(AP001918), IncX4, Col(BS512), ColRNAI, Col156, Col(MG828) | 33 kb, 80 kb, 160 kb | air{enteroaggregative immunoglobulin repeat protein}, cma{colicin M}, eilA{Salmonella HilA homolog}, gad{glutamate decarboxylase}, iroN{enterobactin siderophore receptor protein}, iss{increased serum survival}, lpfA{long polar fimbriae} |