Skip to main content

Table 2 Species level differences between Crohn's disease and Control

From: Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn’s disease

Depleted in crohn's disease Enriched in crohn's disease
Species p-value Adjusted p-value Species p-value Adjusted p-value
Gut
 Faecalibacterium prausnitzii*  < 0.001 0.010 Clostridium nexile*  < 0.001 0.038
 Roseburia inulinivorans*  < 0.001 0.010 Ruminococcus gnavus* 0.001 0.043
 Alistipes senegalensis*  < 0.001 0.029 Bifidobacterium breve 0.001 0.060
 Bacteroides faecis 0.001 0.060 Escherichia unclassified 0.003 0.105
 Coprococcus catus 0.002 0.083 Escherichia coli 0.004 0.115
 Ruminococcus callidus 0.002 0.099 Anaerostipes unclassified 0.005 0.115
 Eubacterium rectale 0.003 0.100 Streptococcus anginosus 0.005 0.115
 Parabacteroides merdae 0.005 0.115 Streptococcus pasteurianus 0.005 0.115
 Bacteroides vulgatus 0.006 0.125 Coprobacillus unclassified 0.009 0.149
 Eubacterium eligens 0.007 0.140 Atopobium parvulum 0.010 0.149
 Dorea longicatena 0.007 0.140 Fusobacterium nucleatum 0.010 0.149
 Megamonas hypermegale 0.010 0.149 Blautia producta 0.021 0.208
 Alistipes putredinis 0.010 0.149 Erysipelotrichaceae bacterium 0.021 0.208
 Catenibacterium mitsuokai 0.010 0.149 Morganella morganii 0.021 0.208
 Bacteroides coprocola 0.012 0.163 Streptococcus macedonicus 0.021 0.208
 Paraprevotella unclassified 0.013 0.163 Proteus mirabilis 0.021 0.208
 Coprococcus comes 0.013 0.163 Veillonella atypica 0.026 0.232
 Peptostreptococcaceae unclassified 0.014 0.170 Acidaminococcus fermentans 0.041 0.268
 Bacteroides plebeius 0.018 0.208 Acidaminococcus sp D21 0.041 0.268
 Eubacterium ventriosum 0.021 0.208 Clostridium innocuum 0.041 0.268
 Bacteroides stercoris 0.023 0.219 Lachnospiraceae bacterium 0.041 0.268
 Alistipes finegoldii 0.024 0.222 Lactobacillus gasseri 0.041 0.268
 Alistipes shahii 0.025 0.228 Lactobacillus mucosae 0.041 0.268
 Bacteroides nordii 0.027 0.236 Peptostreptococcus anaerobius 0.041 0.268
 Odoribacter splanchnicus 0.028 0.236 Prevotella histicola 0.041 0.268
 Eubacterium siraeum 0.031 0.260 Scardovia wiggsiae 0.041 0.268
 Holdemania unclassified 0.037 0.268 Streptococcus mutans 0.041 0.268
 Lachnospiraceae bacterium 5_1_63FAA 0.038 0.268 Rothia dentocariosa 0.043 0.273
 Barnesiella intestinihominis 0.049 0.297 Clostridium ramosum 0.048 0.297
 Roseburia hominis 0.049 0.297    
Saliva
 Bacteroides uniformis  < 0.001 0.117 Human herpesvirus 4 0.002 0.117
 Bacteroides dorei 0.001 0.117 Streptococcus anginosus 0.002 0.117
 Haemophilus parainfluenzae 0.003 0.128 Streptococcus oligofermentans 0.002 0.117
 Subdoligranulum unclassified 0.023 0.526 Streptococcus vestibularis 0.002 0.117
 Prevotella salivae 0.033 0.526 Streptococcus cristatus 0.004 0.134
 Prevotella intermedia 0.039 0.526 Peptostreptococcus stomatis 0.010 0.326
    Streptococcus salivarius 0.020 0.526
    Actinomyces sp. ICM47 0.021 0.526
    Actinomyces naeslundii 0.032 0.526
    Stomatobaculum longum 0.033 0.526
    Actinomyces georgiae 0.041 0.526
    Lactobacillus fermentum 0.041 0.526
    Olsenella_uli 0.041 0.526
    Oribacterium sp. Oral taxon 078 0.041 0.526
    Parvimonas micra 0.041 0.526
    Slackia unclassified 0.041 0.526
    Streptococcus peroris 0.046 0.564
  1. *Adjusted p-value < 0.05