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Table 2 Two most frequent segments in EPIYA repeat region

From: Diversity of 3′ variable region of cagA gene in Helicobacter pylori strains isolated from Chinese population

Segment

Sequences

Ratio

AD

KELNEKLFGNSNNNNNGLKNNTEPIYAQVNKKK

145/483

AD

KELNEKLFGNSNNNNNGLKNNTEPIYAKVNKKK

29/483

BD

TGQVASPEEPIYAQVAKKVSAKIDQLNEATS

98/478

BD

TGQATSPEEPIYAQVAKKVSAKIDQLNEATS

89/478

D

AINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEAN

179/468

D

AINRKIDRINKIASAGKGVGGFSGAGQSASPEPIYATIDFDEAN

85/468

AC

KELNEKFKNFNNNNNGLKNEPIYAKVNKKK

15/22

AC

KELNAKLGNFNNNNNGLKNEPIYAKVNKKK

6/22

BC

TGQVASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAG

5/22

BC

TGQAASPEEPIYAQVAKKVNAKIDRLNQIASGLGGVGQAAG

2/22

C

FPLKRHDKVDDLSKVGLSASPEPIYATIDDLGGP

16/28

C

FPLKRHDKVDDLSKVGRSVSPEPIYATIDDLGGP

4/28

  1. Different amino acids in the two sequences are highlighted; Ratio = (Number of the segment)/(Total)
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Gut Pathogens

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