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Fig. 3 | Gut Pathogens

Fig. 3

From: Evolution of the GII.3[P12] Norovirus from 2010 to 2019 in Jiangsu, China

Fig. 3

Recombinantion events identified by SimPlot analysis in this study. The breakpoint position of recombinant is marked with red line. The plot was obtained using a 200 bp sliding window, steps of 20 bp, and K-2-p model. The X-axis indicates the nucleotide positions in the multiple alignments of the NoV sequences; and the Y-axis indicates nucleotide identities (%) between the query sequence (JSSZ10257/2010/CHN) and the NoV reference strains. Seven methods (RDP, GENECONV, Chimaera, MaxChi, 3Seq, BootScan and SiScan) implemented in the RDP4 were also used to confirm the recombination events. The recombination event was confirmed as a significant (p < 0.01) with a Bootscan analysis in both the SimPlot and RDP4 programs

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