S. No | Isolate | Accession number | Read depth coverage | No. of contigs | Genome size (bp) | No. of CDS | Coding percentage | G + C percentage | Lineage | CAG PAI | Vac allele | EPIYA Motif | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GD13 | SRR13341718 | 56 | 32 | 1610603 | 1504 | 94.2 | 38.5 | hpEurope | Negative (−) | s2m2 | – | ||
2 | GD14 | SRR13341717 | 44 | 33 | 1630906 | 1540 | 94.8 | 39.1 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
3 | GD15 | SRR13341706 | 210 | 44 | 1611095 | 1508 | 95.4 | 39.5 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
4 | GD16 | SRR13341695 | 50 | 52 | 1678689 | 1572 | 91 | 38.5 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
5 | GD17 | SRR13341684 | 107 | 38 | 1629934 | 1546 | 91.1 | 39.2 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
6 | GD18 | SRR13341673 | 53 | 49 | 1674278 | 1568 | 91 | 39.3 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
7 | GD19 | SRR13341662 | 119 | 36 | 1563624 | 1480 | 90.9 | 39.6 | hspEastAsia | Positive ( +) | s1m2 | ABCC | ||
8 | GD20 | SRR13341651 | 203 | 64 | 1696341 | 1589 | 95.6 | 38.9 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
9 | GD21 | SRR13341640 | 113 | 28 | 1603954 | 1517 | 91.1 | 38.9 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
10 | GD22 | SRR13341636 | 156 | 29 | 1567287 | 1501 | 94.5 | 39.6 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
11 | GD23 | SRR13341716 | 148 | 49 | 1641514 | 1534 | 93.4 | 39.5 | hpEurope | Negative (−) | s1m2 | – | ||
12 | GD24 | SRR13341715 | 148 | 33 | 1568554 | 1491 | 94.1 | 39.5 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
13 | GD25 | SRR13341714 | 51 | 31 | 1598180 | 1519 | 99.1 | 38.5 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
14 | GD26 | SRR13341713 | 143 | 33 | 1634715 | 1549 | 94.8 | 39.5 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
15 | GD29 | SRR13341712 | 216 | 36 | 1628946 | 1534 | 94.5 | 39.5 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
16 | GD30 | SRR13341711 | 120 | 42 | 1611416 | 1502 | 94.6 | 39 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
17 | GD31 | SRR13341710 | 100 | 41 | 1642696 | 1540 | 90.7 | 39.4 | hpEurope | Negative (−) | s1m2 | – | ||
18 | GD32 | SRR13341709 | 161 | 30 | 1597373 | 1514 | 93.3 | 39.5 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
19 | GD33 | SRR13341708 | 90 | 36 | 1674481 | 1557 | 92.7 | 38.7 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
20 | GD34 | SRR13341707 | 82 | 41 | 1682613 | 1578 | 95.5 | 38.5 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
21 | GD35 | SRR13341705 | 170 | 24 | 1553118 | 1459 | 93.1 | 39.5 | hspEastAsia | Positive ( +) | s1m2 | ABC | ||
22 | GD36 | SRR13341704 | 250 | 34 | 1683121 | 1572 | 94.2 | 39.3 | hpEurope | Negative (−) | s1m2 | – | ||
23 | GD37 | SRR13341703 | 109 | 20 | 1590694 | 1503 | 91.1 | 39.5 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
24 | GD38 | SRR13341702 | 264 | 36 | 1570557 | 1501 | 94.1 | 39.4 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
25 | GD39 | SRR13341701 | 190 | 34 | 1637712 | 1542 | 94.4 | 36.9 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
26 | GD40 | SRR13341700 | 119 | 36 | 1577762 | 1492 | 92.8 | 38.9 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
27 | GD42 | SRR13341699 | 413 | 24 | 1580561 | 1502 | 94.7 | 38.7 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
28 | GD43 | SRR13341698 | 413 | 24 | 1580561 | 1502 | 94.5 | 38.7 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
29 | GD44 | SRR13341697 | 170 | 22 | 1646259 | 1551 | 95.8 | 39 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
30 | GD45 | SRR13341696 | 199 | 38 | 1634413 | 1536 | 94.6 | 38.5 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
31 | GD46 | SRR13341694 | 291 | 39 | 1639952 | 1534 | 93.6 | 38.9 | hpEurope | Negative (-) | s1m2 | – | ||
32 | GD47 | SRR13341693 | 251 | 31 | 1653247 | 1569 | 96.2 | 38.7 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
33 | GD48 | SRR13341692 | 158 | 38 | 1637838 | 1539 | 93.4 | 38.8 | hpEurope | Negative (−) | s1m2 | – | ||
34 | GD49 | SRR13341691 | 183 | 23 | 1577856 | 1503 | 93.9 | 38.9 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
35 | GD50 | SRR13341690 | 108 | 39 | 1643348 | 1540 | 90.5 | 38.6 | hpEurope | Negative (−) | s1m2 | – | ||
36 | GD51 | SRR13341689 | 360 | 31 | 1604541 | 1509 | 95.3 | 39.4 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
37 | GD52 | SRR13341688 | 184 | 35 | 1537698 | 1471 | 92.9 | 39.1 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
38 | GD53 | SRR13341687 | 175 | 34 | 1573076 | 1480 | 94.5 | 39 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
39 | GD55 | SRR13341686 | 238 | 43 | 1638622 | 1533 | 93.6 | 38.6 | hpEurope | Negative (-) | s1m2 | – | ||
40 | GD56 | SRR13341685 | 180 | 33 | 1635691 | 1548 | 95.3 | 38.6 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
41 | GD57 | SRR13341683 | 240 | 33 | 1621906 | 1517 | 95.8 | 38.5 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
42 | GD58 | SRR13341682 | 308 | 35 | 1596620 | 1513 | 94.7 | 38.6 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
43 | GD59 | SRR13341681 | 262 | 48 | 1655979 | 1548 | 93.5 | 38.4 | hpEurope | Negative (−) | s1m2 | – | ||
44 | GD60 | SRR13341680 | 178 | 31 | 1557741 | 1464 | 93.6 | 38.8 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
45 | GD61 | SRR13341679 | 163 | 22 | 1600212 | 1512 | 94.9 | 38.7 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
46 | GD62 | SRR13341678 | 210 | 25 | 1554217 | 1451 | 93.2 | 39 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
47 | GD63 | SRR13341677 | 200 | 28 | 1574015 | 1503 | 94.2 | 38.3 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
48 | GD64 | SRR13341676 | 278 | 29 | 1628242 | 1525 | 95.8 | 38.7 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
49 | GD65 | SRR13341675 | 208 | 27 | 1652774 | 1568 | 95.4 | 37.5 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
50 | GD66 | SRR13341674 | 145 | 36 | 1593774 | 1501 | 94.5 | 38.7 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
51 | GD67 | SRR13341672 | 122 | 32 | 1593031 | 1501 | 91.7 | 38.7 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
52 | GD68 | SRR13341671 | 161 | 29 | 1593992 | 1485 | 94.2 | 38.8 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
53 | GD69 | SRR13341670 | 294 | 33 | 1562632 | 1474 | 93.9 | 38.6 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
54 | GD70 | SRR13341669 | 305 | 36 | 1622171 | 1540 | 94.6 | 39 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
55 | GD71 | SRR13341668 | 456 | 34 | 1554719 | 1470 | 93.3 | 38.8 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
56 | GD72 | SRR13341667 | 76 | 46 | 1593519 | 1501 | 93.3 | 38.9 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
57 | GD73 | SRR13341666 | 67 | 31 | 1612805 | 1538 | 90.5 | 38.8 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
58 | GD74 | SRR13341665 | 84 | 37 | 1624940 | 1525 | 94.9 | 38.8 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
59 | GD75 | SRR13341664 | 133 | 26 | 1608952 | 1530 | 94.6 | 39.3 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
60 | GD76 | SRR13341663 | 174 | 37 | 1642815 | 1541 | 93.4 | 39.3 | hpEurope | Negative (−) | s1m2 | – | ||
61 | GD77 | SRR13341661 | 149 | 45 | 1636257 | 1530 | 93.3 | 39.2 | hpEurope | Negative (−) | s1m2 | – | ||
62 | GD79 | SRR13341660 | 144 | 28 | 1563358 | 1484 | 95.4 | 39.6 | hspEastAsia | Negative (−) | s1m2 | – | ||
63 | GD80 | SRR13341659 | 136 | 41 | 1667621 | 1556 | 95.7 | 38.8 | hpEurope | Positive ( +) | s1m1 | ABD | ||
64 | GD81 | SRR13341658 | 131 | 51 | 1668954 | 1565 | 94 | 38.4 | hpEurope | Negative (−) | s1m2 | – | ||
65 | GD82 | SRR13341657 | 49 | 38 | 1620888 | 1530 | 91.1 | 38.6 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
66 | GD83 | SRR13341656 | 119 | 30 | 1547013 | 1459 | 93.8 | 39.6 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
67 | GD84 | SRR13341655 | 122 | 34 | 1642913 | 1544 | 93.3 | 39.2 | hpEurope | Negative (−) | s1m2 | – | ||
68 | GD85 | SRR13341654 | 85 | 31 | 1565822 | 1490 | 91.4 | 39.3 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
69 | GD86 | SRR13341653 | 95 | 53 | 1659927 | 1562 | 92 | 38.8 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
70 | GD87 | SRR13341652 | 113 | 37 | 1642282 | 1536 | 90.5 | 39.2 | hpEurope | Negative (−) | s1m2 | – | ||
71 | GD88 | SRR13341650 | 162 | 31 | 1553891 | 1473 | 93.1 | 39.6 | hspEastAsia | Negative (−) | s1m2 | – | ||
72 | GD89 | SRR13341649 | 132 | 35 | 1605386 | 1506 | 92 | 39.4 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
73 | GD90 | SRR13341648 | 128 | 47 | 1675801 | 1567 | 95.5 | 39.1 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
74 | GD91 | SRR13341647 | 97 | 16 | 1563179 | 1486 | 90.3 | 39.4 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
75 | GD92 | SRR13341646 | 111 | 46 | 1565490 | 1461 | 91.2 | 39.5 | hspEastAsia | Positive ( +) | s1m2 | ABCC | ||
76 | GD93 | SRR13341645 | 38 | 83 | 1639304 | 1518 | 93.7 | 38.6 | hpEurope | Positive ( +) | s1m2 | ABD | ||
77 | GD94 | SRR13341644 | 94 | 56 | 1637406 | 1534 | 94 | 37.6 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
78 | GD95 | SRR13341643 | 150 | 47 | 1674995 | 1560 | 94.3 | 39.1 | hpEurope | Negative (−) | s1m2 | – | ||
79 | GD96 | SRR13341642 | 123 | 32 | 1553728 | 1478 | 89.9 | 39.4 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
80 | GD97 | SRR13341641 | 187 | 33 | 1571349 | 1473 | 94.3 | 39.6 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
81 | GD98 | SRR13341639 | 132 | 34 | 1642357 | 1552 | 95 | 39.1 | hspEastAsia | Positive ( +) | s1m2 | ABD | ||
82 | GD99 | SRR13341638 | 131 | 41 | 1641954 | 1552 | 94.8 | 38.4 | hspEastAsia | Positive ( +) | s1m1 | ABD | ||
83 | GD100 | SRR13341637 | 67 | 34 | 1673344 | 1574 | 91.1 | 38.3 | hspEastAsia | Positive ( +) | s1m1 | ABD |