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Table 1 Genome statistics of the whole-genome sequences of the 83 H. pylori isolates in this study

From: The endemic Helicobacter pylori population in Southern Vietnam has both South East Asian and European origins

S. No Isolate Accession number Read depth coverage No. of contigs Genome size (bp) No. of CDS Coding percentage G + C percentage Lineage CAG PAI Vac allele EPIYA Motif
1 GD13 SRR13341718 56 32 1610603 1504 94.2 38.5 hpEurope Negative (−) s2m2
2 GD14 SRR13341717 44 33 1630906 1540 94.8 39.1 hspEastAsia Positive ( +) s1m1 ABD
3 GD15 SRR13341706 210 44 1611095 1508 95.4 39.5 hspEastAsia Positive ( +) s1m1 ABD
4 GD16 SRR13341695 50 52 1678689 1572 91 38.5 hspEastAsia Positive ( +) s1m1 ABD
5 GD17 SRR13341684 107 38 1629934 1546 91.1 39.2 hspEastAsia Positive ( +) s1m1 ABD
6 GD18 SRR13341673 53 49 1674278 1568 91 39.3 hspEastAsia Positive ( +) s1m1 ABD
7 GD19 SRR13341662 119 36 1563624 1480 90.9 39.6 hspEastAsia Positive ( +) s1m2 ABCC
8 GD20 SRR13341651 203 64 1696341 1589 95.6 38.9 hspEastAsia Positive ( +) s1m1 ABD
9 GD21 SRR13341640 113 28 1603954 1517 91.1 38.9 hspEastAsia Positive ( +) s1m2 ABD
10 GD22 SRR13341636 156 29 1567287 1501 94.5 39.6 hspEastAsia Positive ( +) s1m2 ABD
11 GD23 SRR13341716 148 49 1641514 1534 93.4 39.5 hpEurope Negative (−) s1m2
12 GD24 SRR13341715 148 33 1568554 1491 94.1 39.5 hspEastAsia Positive ( +) s1m1 ABD
13 GD25 SRR13341714 51 31 1598180 1519 99.1 38.5 hspEastAsia Positive ( +) s1m1 ABD
14 GD26 SRR13341713 143 33 1634715 1549 94.8 39.5 hspEastAsia Positive ( +) s1m2 ABD
15 GD29 SRR13341712 216 36 1628946 1534 94.5 39.5 hspEastAsia Positive ( +) s1m2 ABD
16 GD30 SRR13341711 120 42 1611416 1502 94.6 39 hspEastAsia Positive ( +) s1m2 ABD
17 GD31 SRR13341710 100 41 1642696 1540 90.7 39.4 hpEurope Negative (−) s1m2
18 GD32 SRR13341709 161 30 1597373 1514 93.3 39.5 hspEastAsia Positive ( +) s1m1 ABD
19 GD33 SRR13341708 90 36 1674481 1557 92.7 38.7 hspEastAsia Positive ( +) s1m2 ABD
20 GD34 SRR13341707 82 41 1682613 1578 95.5 38.5 hspEastAsia Positive ( +) s1m1 ABD
21 GD35 SRR13341705 170 24 1553118 1459 93.1 39.5 hspEastAsia Positive ( +) s1m2 ABC
22 GD36 SRR13341704 250 34 1683121 1572 94.2 39.3 hpEurope Negative (−) s1m2
23 GD37 SRR13341703 109 20 1590694 1503 91.1 39.5 hspEastAsia Positive ( +) s1m1 ABD
24 GD38 SRR13341702 264 36 1570557 1501 94.1 39.4 hspEastAsia Positive ( +) s1m2 ABD
25 GD39 SRR13341701 190 34 1637712 1542 94.4 36.9 hspEastAsia Positive ( +) s1m1 ABD
26 GD40 SRR13341700 119 36 1577762 1492 92.8 38.9 hspEastAsia Positive ( +) s1m2 ABD
27 GD42 SRR13341699 413 24 1580561 1502 94.7 38.7 hspEastAsia Positive ( +) s1m1 ABD
28 GD43 SRR13341698 413 24 1580561 1502 94.5 38.7 hspEastAsia Positive ( +) s1m1 ABD
29 GD44 SRR13341697 170 22 1646259 1551 95.8 39 hspEastAsia Positive ( +) s1m2 ABD
30 GD45 SRR13341696 199 38 1634413 1536 94.6 38.5 hspEastAsia Positive ( +) s1m2 ABD
31 GD46 SRR13341694 291 39 1639952 1534 93.6 38.9 hpEurope Negative (-) s1m2
32 GD47 SRR13341693 251 31 1653247 1569 96.2 38.7 hspEastAsia Positive ( +) s1m1 ABD
33 GD48 SRR13341692 158 38 1637838 1539 93.4 38.8 hpEurope Negative (−) s1m2
34 GD49 SRR13341691 183 23 1577856 1503 93.9 38.9 hspEastAsia Positive ( +) s1m1 ABD
35 GD50 SRR13341690 108 39 1643348 1540 90.5 38.6 hpEurope Negative (−) s1m2
36 GD51 SRR13341689 360 31 1604541 1509 95.3 39.4 hspEastAsia Positive ( +) s1m2 ABD
37 GD52 SRR13341688 184 35 1537698 1471 92.9 39.1 hspEastAsia Positive ( +) s1m2 ABD
38 GD53 SRR13341687 175 34 1573076 1480 94.5 39 hspEastAsia Positive ( +) s1m2 ABD
39 GD55 SRR13341686 238 43 1638622 1533 93.6 38.6 hpEurope Negative (-) s1m2
40 GD56 SRR13341685 180 33 1635691 1548 95.3 38.6 hspEastAsia Positive ( +) s1m2 ABD
41 GD57 SRR13341683 240 33 1621906 1517 95.8 38.5 hspEastAsia Positive ( +) s1m2 ABD
42 GD58 SRR13341682 308 35 1596620 1513 94.7 38.6 hspEastAsia Positive ( +) s1m2 ABD
43 GD59 SRR13341681 262 48 1655979 1548 93.5 38.4 hpEurope Negative (−) s1m2
44 GD60 SRR13341680 178 31 1557741 1464 93.6 38.8 hspEastAsia Positive ( +) s1m2 ABD
45 GD61 SRR13341679 163 22 1600212 1512 94.9 38.7 hspEastAsia Positive ( +) s1m2 ABD
46 GD62 SRR13341678 210 25 1554217 1451 93.2 39 hspEastAsia Positive ( +) s1m2 ABD
47 GD63 SRR13341677 200 28 1574015 1503 94.2 38.3 hspEastAsia Positive ( +) s1m2 ABD
48 GD64 SRR13341676 278 29 1628242 1525 95.8 38.7 hspEastAsia Positive ( +) s1m2 ABD
49 GD65 SRR13341675 208 27 1652774 1568 95.4 37.5 hspEastAsia Positive ( +) s1m1 ABD
50 GD66 SRR13341674 145 36 1593774 1501 94.5 38.7 hspEastAsia Positive ( +) s1m1 ABD
51 GD67 SRR13341672 122 32 1593031 1501 91.7 38.7 hspEastAsia Positive ( +) s1m2 ABD
52 GD68 SRR13341671 161 29 1593992 1485 94.2 38.8 hspEastAsia Positive ( +) s1m1 ABD
53 GD69 SRR13341670 294 33 1562632 1474 93.9 38.6 hspEastAsia Positive ( +) s1m1 ABD
54 GD70 SRR13341669 305 36 1622171 1540 94.6 39 hspEastAsia Positive ( +) s1m1 ABD
55 GD71 SRR13341668 456 34 1554719 1470 93.3 38.8 hspEastAsia Positive ( +) s1m1 ABD
56 GD72 SRR13341667 76 46 1593519 1501 93.3 38.9 hspEastAsia Positive ( +) s1m2 ABD
57 GD73 SRR13341666 67 31 1612805 1538 90.5 38.8 hspEastAsia Positive ( +) s1m1 ABD
58 GD74 SRR13341665 84 37 1624940 1525 94.9 38.8 hspEastAsia Positive ( +) s1m1 ABD
59 GD75 SRR13341664 133 26 1608952 1530 94.6 39.3 hspEastAsia Positive ( +) s1m1 ABD
60 GD76 SRR13341663 174 37 1642815 1541 93.4 39.3 hpEurope Negative (−) s1m2
61 GD77 SRR13341661 149 45 1636257 1530 93.3 39.2 hpEurope Negative (−) s1m2
62 GD79 SRR13341660 144 28 1563358 1484 95.4 39.6 hspEastAsia Negative (−) s1m2
63 GD80 SRR13341659 136 41 1667621 1556 95.7 38.8 hpEurope Positive ( +) s1m1 ABD
64 GD81 SRR13341658 131 51 1668954 1565 94 38.4 hpEurope Negative (−) s1m2
65 GD82 SRR13341657 49 38 1620888 1530 91.1 38.6 hspEastAsia Positive ( +) s1m1 ABD
66 GD83 SRR13341656 119 30 1547013 1459 93.8 39.6 hspEastAsia Positive ( +) s1m1 ABD
67 GD84 SRR13341655 122 34 1642913 1544 93.3 39.2 hpEurope Negative (−) s1m2
68 GD85 SRR13341654 85 31 1565822 1490 91.4 39.3 hspEastAsia Positive ( +) s1m1 ABD
69 GD86 SRR13341653 95 53 1659927 1562 92 38.8 hspEastAsia Positive ( +) s1m2 ABD
70 GD87 SRR13341652 113 37 1642282 1536 90.5 39.2 hpEurope Negative (−) s1m2
71 GD88 SRR13341650 162 31 1553891 1473 93.1 39.6 hspEastAsia Negative (−) s1m2
72 GD89 SRR13341649 132 35 1605386 1506 92 39.4 hspEastAsia Positive ( +) s1m2 ABD
73 GD90 SRR13341648 128 47 1675801 1567 95.5 39.1 hspEastAsia Positive ( +) s1m1 ABD
74 GD91 SRR13341647 97 16 1563179 1486 90.3 39.4 hspEastAsia Positive ( +) s1m2 ABD
75 GD92 SRR13341646 111 46 1565490 1461 91.2 39.5 hspEastAsia Positive ( +) s1m2 ABCC
76 GD93 SRR13341645 38 83 1639304 1518 93.7 38.6 hpEurope Positive ( +) s1m2 ABD
77 GD94 SRR13341644 94 56 1637406 1534 94 37.6 hspEastAsia Positive ( +) s1m1 ABD
78 GD95 SRR13341643 150 47 1674995 1560 94.3 39.1 hpEurope Negative (−) s1m2
79 GD96 SRR13341642 123 32 1553728 1478 89.9 39.4 hspEastAsia Positive ( +) s1m1 ABD
80 GD97 SRR13341641 187 33 1571349 1473 94.3 39.6 hspEastAsia Positive ( +) s1m2 ABD
81 GD98 SRR13341639 132 34 1642357 1552 95 39.1 hspEastAsia Positive ( +) s1m2 ABD
82 GD99 SRR13341638 131 41 1641954 1552 94.8 38.4 hspEastAsia Positive ( +) s1m1 ABD
83 GD100 SRR13341637 67 34 1673344 1574 91.1 38.3 hspEastAsia Positive ( +) s1m1 ABD