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Table 5 List of primers used in this study

From: Prevalence, antimicrobial susceptibility and virulence gene profiles of Arcobacter species isolated from human stool samples, foods of animal origin, ready-to-eat salad mixes and environmental water

Target gene

Primer pair

Primer sequence (5’–3’)

Amplicon size (bp)

References

Species identification

 A. butzleri

BUTZ F

CCTGGACTTGACATAGTAAGAATGA

401

Houf et al. [76]

 16 S rRNA

ARCO R

CGTATTCACCGTAGCATAGC

 A. skirrowii

SKIR F

GGCGATTTACTGGAACACA

641

 16 S rRNA

ARCO R

CGTATTCACCGTAGCATAGC

 A. cryaerophilus

CRY1

TGCTGGAGCGGATAGAAGTA

257

 23 S rRNA

CRY2

AACAACCTACGTCCTTCGAC

Verification

 rpoB

CamrpoB-L

CCAATTTATGGATCAAAC

524

Korczak et al. [77]

RpoB-R

GTTGCATGTTNGNACCCAT

Detection of putative virulence genes

 mviN

mviN-F

TGCACTTGTTGCAAAACGGTG

294

Whiteduck-Leveillee et al. [78]

mviN-R

TGCTGATGGAGCTTTTACGCAAGC

 cadF

cadF-F

TTACTCCTACACCGTAGT

283

Douidah et al. [70]

cadF-R

AAACTATGCTAACGCTGGTT

 cj1349

cj1349-F

CCAGAAATCACTGGCTTTTGAG

659

Whiteduck-Leveillee et al. [78]

cj1349-R

GGGCATAAGTTAGATGAGGTTCC

 ciaB

ciaB-F

TGGGCAGATGTGGATAGAGCTTGGA

284

ciaB-R

TAGTGCTGGTCGTCCCACATAAAG

 pldA

pldA-F

TTGACGAGACAATAAGTGCAGC

293

pldA-R

CGTCTTTATCTTTGCTTTCAGGGA

 hecA

hecA-F

GTGGAAGTACAACGATAGCAGGCTC

537

hecA-R

GTCTGTTTTAGTTGCTCTGCACTC

 hecB

hecB-F

CTAAACTCTACAAATCGTGC

528

hecB-R

CTTTTGAGTGTTGACCTC

 tlyA

tlyA-F

CAAAGTCGAAACAAAGCGACTG

230

tlyA-R

TCCACCAGTGCTACTTCCTATA

 irgA

irgA-F

TGCAGAGGATACTTGGAGCGTAACT

437

irgA-R

GTATAACCCCATTGATGAGGAGCA

 iroE

iroE-F

AATGGCTATGATGTTGTTTAC

415

Karadas et al. [68]

iroE-R

TTGCTGCTATGAAGTTTTG