Target gene | Primer pair | Primer sequence (5’–3’) | Amplicon size (bp) | References |
---|---|---|---|---|
Species identification | ||||
 A. butzleri | BUTZ F | CCTGGACTTGACATAGTAAGAATGA | 401 | Houf et al. [76] |
 16 S rRNA | ARCO R | CGTATTCACCGTAGCATAGC | ||
 A. skirrowii | SKIR F | GGCGATTTACTGGAACACA | 641 | |
 16 S rRNA | ARCO R | CGTATTCACCGTAGCATAGC | ||
 A. cryaerophilus | CRY1 | TGCTGGAGCGGATAGAAGTA | 257 | |
 23 S rRNA | CRY2 | AACAACCTACGTCCTTCGAC | ||
Verification | ||||
 rpoB | CamrpoB-L | CCAATTTATGGATCAAAC | 524 | Korczak et al. [77] |
RpoB-R | GTTGCATGTTNGNACCCAT | |||
Detection of putative virulence genes | ||||
 mviN | mviN-F | TGCACTTGTTGCAAAACGGTG | 294 | Whiteduck-Leveillee et al. [78] |
mviN-R | TGCTGATGGAGCTTTTACGCAAGC | |||
 cadF | cadF-F | TTACTCCTACACCGTAGT | 283 | Douidah et al. [70] |
cadF-R | AAACTATGCTAACGCTGGTT | |||
 cj1349 | cj1349-F | CCAGAAATCACTGGCTTTTGAG | 659 | Whiteduck-Leveillee et al. [78] |
cj1349-R | GGGCATAAGTTAGATGAGGTTCC | |||
 ciaB | ciaB-F | TGGGCAGATGTGGATAGAGCTTGGA | 284 | |
ciaB-R | TAGTGCTGGTCGTCCCACATAAAG | |||
 pldA | pldA-F | TTGACGAGACAATAAGTGCAGC | 293 | |
pldA-R | CGTCTTTATCTTTGCTTTCAGGGA | |||
 hecA | hecA-F | GTGGAAGTACAACGATAGCAGGCTC | 537 | |
hecA-R | GTCTGTTTTAGTTGCTCTGCACTC | |||
 hecB | hecB-F | CTAAACTCTACAAATCGTGC | 528 | |
hecB-R | CTTTTGAGTGTTGACCTC | |||
 tlyA | tlyA-F | CAAAGTCGAAACAAAGCGACTG | 230 | |
tlyA-R | TCCACCAGTGCTACTTCCTATA | |||
 irgA | irgA-F | TGCAGAGGATACTTGGAGCGTAACT | 437 | |
irgA-R | GTATAACCCCATTGATGAGGAGCA | |||
 iroE | iroE-F | AATGGCTATGATGTTGTTTAC | 415 | Karadas et al. [68] |
iroE-R | TTGCTGCTATGAAGTTTTG |