Table 5 The pathway analysis of the pathogenic region SPI-1, 2 and 5 in S. enterica Typhimurium ms202
Region | Pathways | Description | Count in network | Strength | False discovery rate |
|---|---|---|---|---|---|
SPI-1 | seni05100 | Bacterial invasion of epithelial cells | 5 of 9 | 2.05 | 1.04e–08 |
seni05132 | Salmonella infection | 7 of 26 | 1.74 | 5.79e–10 | |
seni03070 | Bacterial secretion system | 2 of 38 | 1.03 | 0.0242 | |
seni02040 | Flagellar assembly | 2 of 38 | 1.03 | 0.0242 | |
seni02010 | ABC transporters | 4 of 168 | 0.68 | 0.0181 | |
SPI-2 | seni03070 | Bacterial secretion system | 10 of 38 | 1.47 | 2.45e–11 |
seni02040 | Flagellar assembly | 10 of 38 | 1.47 | 2.45e–11 | |
seni05132 | Salmonella infection | 4 of 26 | 1.23 | 0.00021 | |
SPI-5 | seni00750 | Vitamin B6 metabolism | 2 of 9 | 2.15 | 0.00035 |
seni00680 | Methane metabolism | 3 of 29 | 1.82 | 0.00010 | |
seni00260 | Glycine, serine and threonine metabolism | 3 of 35 | 1.74 | 0.00010 | |
seni01200 | Carbon metabolism | 3 of 116 | 1.22 | 0.0014 | |
seni01230 | Biosynthesis of amino acids | 3 of 128 | 1.17 | 0.0014 | |
seni02020 | Two-component system | 3 of 168 | 1.05 | 0.0026 | |
seni01130 | Biosynthesis of antibiotics | 3 of 216 | 0.95 | 0.0046 | |
seni01120 | Microbial metabolism in diverse environments | 3 of 265 | 0.86 | 0.0071 | |
seni01100 | Metabolic pathways | 4 of 733 | 0.54 | 0.0172 |