Genomes of Vibrio metoecus co-isolated with Vibrio cholerae extend our understanding of differences between these closely related species

Orata, Fabini D.; Hussain, Nora A. S.; Liang, Kevin Y. H.; Hu, Dalong; Boucher, Yann F.

doi:10.1186/s13099-022-00516-x

Gut Pathogens

Table 1 Genome sequences of V. cholerae and V. metoecus Oyster Pond isolates used in this study

From: Genomes of Vibrio metoecus co-isolated with Vibrio cholerae extend our understanding of differences between these closely related species

Species and strain	Isolation date	Clonal complex^a	Genome size (bp)	G+C content (%)	Coverage (×)	N50 (bp)	Completeness (%)^b	GenBank accession number
V. cholerae
OYP1G01	August, 2009	10	3,969,671	47.4	313	119,133	100	NMTO00000000
OYP2A12	August, 2009	4	4,068,380	47.4	691	174,738	100	NMTN00000000
OYP2E01	August, 2009	2	3,966,741	47.7	292	339,252	100	NMTK00000000
OYP3B05^c	August, 2009	13	4,014,368	47.5	629	285,424	100	LBGB00000000
OYP3F10	August, 2009	17	3,937,113	47.6	83	94,842	100	NMTJ00000000
OYP4B01	August, 2009	5	3,929,714	47.6	90	128,164	100	NMTI00000000
OYP4C07^c	August, 2009	13	4,015,430	47.5	714	285,370	100	LBGE00000000
OYP4G08	August, 2009	11	3,927,912	47.5	106	246,196	100	NMTH00000000
OYP4H06	August, 2009	5	3,907,548	47.6	48	133,911	99	NMTG00000000
OYP4H11	August, 2009	2	3,934,959	47.7	154	181,085	100	NMTE00000000
OYP6D06	August, 2009	12	4,036,442	47.6	46	54,501	100	NMTC00000000
OYP6E07	August, 2009	16	3,957,612	47.5	76	145,248	100	NMTB00000000
OYP6F08	August, 2009	2	3,912,172	47.7	134	150,335	100	NMTA00000000
OYP6F10	August, 2009	1	3,860,908	47.6	57	124,026	100	NMSZ00000000
OYP7C09	August, 2009	1	3,869,397	47.6	102	220,009	99	NMSX00000000
OYP8C06	September, 2009	3	4,033,034	47.4	297	210,543	100	NMSV00000000
OYP8F12	September, 2009	3	4,038,901	47.4	366	210,741	100	NMSU00000000
V. metoecus
OP3H^d	2006	ND^e	3,963,175	46.9	270	255,052	100	JJMN00000000
OYP4D01^c	August, 2009	7	3,982,476	46.9	671	253,177	100	LBGO00000000
OYP4E03	August, 2009	1	4,098,312	46.8	302	167,594	100	NMST00000000
OYP5B04^c	August, 2009	ST1	4,045,661	46.9	719	291,368	100	LBGP00000000
OYP5B06^c	August, 2009	ND^e	3,938,456	46.9	802	282,144	100	LBGQ00000000
OYP5H08	August, 2009	7	3,986,064	46.9	386	255,385	100	NMSR00000000
OYP8G05	September, 2009	3	4,040,107	46.9	140	122,729	100	NMSQ00000000
OYP8G09	September, 2009	ND^e	3,939,012	46.9	171	155,462	100	NMSP00000000
OYP8G12	September, 2009	ST27	3,890,048	46.9	151	254,309	100	NMSO00000000
OYP8H05	September, 2009	6	4,006,704	46.8	171	180,280	100	NMSN00000000
OYP9B03	September, 2009	6	4,016,639	46.8	356	217,439	100	NMSM00000000
OYP9B09	September, 2009	5	4,027,326	46.9	225	136,801	100	NMSL00000000
OYP9C12	September, 2009	ST2	3,924,188	46.9	291	559,905	100	NMSK00000000
OYP9D03^c	September, 2009	2	3,963,180	46.8	524	277,001	100	LBGR00000000
OYP9D09	September, 2009	1	4,100,806	46.8	379	253,754	100	NMSJ00000000
OYP9E03	September, 2009	2	3,950,427	46.8	171	229,479	100	NMSI00000000
OYP9E10	September, 2009	2	3,914,005	46.8	129	130,891	100	NMSH00000000

^aClonal complex and sequence type (ST) information are based on MLSA using seven housekeeping genes by Kirchberger and colleagues [13]. Singletons that do not belong to a clonal complex are indicated by ST numbers instead
^bCompleteness was calculated by determining the presence of 104 core housekeeping genes (Additional file 1)
^cAlso known as YB isolates (YB3B05, YB4C07, YB4D01, YB5B04, YB5B06, YB9D03). Sequenced previously by Orata and colleagues [20]
^dSequenced previously by Kirchberger and colleagues [15]
^eND: not determined

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