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Table 2 Genome statistics for the S. flexneri genomes sequenced in this study

From: Draft genome sequences of the type strains of Shigella flexneri held at Public Health England: comparison of classical phenotypic and novel molecular assays with whole genome sequence

Serotype Number of high quality mapped reads Average coverage of S. flexneri 2457 T reference Kmer used in Velvet assembly N50 Number of contigs De novo assembly genome size
1a 5593126 121.5896957 79 31660 526 4369471
1b 5332110 115.9154348 79 31344 387 4176066
1c 5593956 121.6077391 81 30176 425 4255254
2a 5541229 120.4615 79 33398 417 4262526
2b 4869600 105.8608696 77 32299 421 4328906
3a 4590499 99.79345652 77 33146 510 4601423
3b 4803610 104.4263043 79 33159 450 4494495
3c 5604902 121.8456957 81 33478 451 4495552
4a 5328467 115.8362391 81 33309 413 4267213
4b 5106835 111.0181522 79 34439 391 4188134
5a 5461876 118.7364348 79 29622 443 4362146
5b 5250432 114.1398261 79 29416 459 4354058
6 6350211 138.0480652 85 20677 614 4401927
E1037 15797791 343.4302391 93 36513 378 4350496
X 17982247 390.918413 93 33586 414 4324701
Y 20943063 455.2839783 95 29717 447 4491024