Table 2 Genome statistics for the S. flexneri genomes sequenced in this study
Serotype | Number of high quality mapped reads | Average coverage of S. flexneri 2457Â T reference | Kmer used in Velvet assembly | N50 | Number of contigs | De novo assembly genome size |
|---|---|---|---|---|---|---|
1a | 5593126 | 121.5896957 | 79 | 31660 | 526 | 4369471 |
1b | 5332110 | 115.9154348 | 79 | 31344 | 387 | 4176066 |
1c | 5593956 | 121.6077391 | 81 | 30176 | 425 | 4255254 |
2a | 5541229 | 120.4615 | 79 | 33398 | 417 | 4262526 |
2b | 4869600 | 105.8608696 | 77 | 32299 | 421 | 4328906 |
3a | 4590499 | 99.79345652 | 77 | 33146 | 510 | 4601423 |
3b | 4803610 | 104.4263043 | 79 | 33159 | 450 | 4494495 |
3c | 5604902 | 121.8456957 | 81 | 33478 | 451 | 4495552 |
4a | 5328467 | 115.8362391 | 81 | 33309 | 413 | 4267213 |
4b | 5106835 | 111.0181522 | 79 | 34439 | 391 | 4188134 |
5a | 5461876 | 118.7364348 | 79 | 29622 | 443 | 4362146 |
5b | 5250432 | 114.1398261 | 79 | 29416 | 459 | 4354058 |
6 | 6350211 | 138.0480652 | 85 | 20677 | 614 | 4401927 |
E1037 | 15797791 | 343.4302391 | 93 | 36513 | 378 | 4350496 |
X | 17982247 | 390.918413 | 93 | 33586 | 414 | 4324701 |
Y | 20943063 | 455.2839783 | 95 | 29717 | 447 | 4491024 |