Table 2 Number of the subsystem-assigned CDSs
From: Genome sequences of the Shiga-like toxin-producing Escherichia coli NCCP15655 and NCCP15656
NCCP15655 | NCCP15656 | E24377A | |
|---|---|---|---|
Carbohydrates | 514 (15.38) | 514 (15.46) | 547 (16.64) |
Clustering-based subsystems | 299 (8.95) | 295 (8.87) | 274 (8.33) |
Amino acids and derivatives | 251 (7.51) | 248 (7.46) | 250 (7.60) |
Cell wall and capsule | 215 (6.43) | 213 (6.41) | 231 (7.03) |
Phages, prophages, transposable elements, plasmids | 120 (3.59) | 117 (3.52) | 69 (2.10) |
Virulence, disease and defense | 164 (4.91) | 163 (4.90) | 132 (4.01) |
Membrane transport | 194 (5.80) | 193 (5.81) | 197 (5.99) |
Protein metabolism | 181 (5.42) | 182 (5.48) | 188 (5.72) |
Cofactors, vitamins, prosthetic groups, pigments | 174 (5.21) | 173 (5.20) | 191 (5.81) |
Stress response | 175 (5.24) | 175 (5.26) | 174 (5.29) |
DNA metabolism | 131 (3.92) | 129 (3.88) | 144 (4.38) |
Respiration | 142 (4.25) | 142 (4.27) | 127 (3.86) |
Nucleosides and nucleotides | 112 (3.35) | 112 (3.37) | 107 (3.25) |
Regulation and cell signaling | 99 (2.96) | 99 (2.98) | 114 (3.47) |
RNA metabolism | 103 (3.08) | 102 (3.07) | 105 (3.19) |
Motility and chemotaxis | 89 (2.66) | 89 (2.68) | 61 (1.86) |
Nitrogen metabolism | 60 (1.80) | 60 (1.81) | 62 (1.89) |
Fatty acids, lipids, and isoprenoids | 58 (1.74) | 58 (1.74) | 63 (1.92) |
Miscellaneous | 51 (1.53) | 51 (1.53) | 50 (1.52) |
Metabolism of aromatic compounds | 42 (1.26) | 42 (1.26) | 33 (1.00) |
Phosphorus metabolism | 38 (1.14) | 38 (1.14) | 39 (1.19) |
Cell division and cell cycle | 32 (0.96) | 32 (0.96) | 36 (1.09) |
Iron acquisition and metabolism | 31 (0.93) | 31 (0.93) | 30 (0.91) |
Sulfur metabolism | 28 (0.84) | 27 (0.81) | 26 (0.79) |
Potassium metabolism | 24 (0.72) | 24 (0.72) | 24 (0.73) |
Secondary metabolism | 11 (0.33) | 11 (0.33) | 11 (0.33) |
Dormancy and sporulation | 4 (0.12) | 4 (0.12) | 3 (0.09) |
Subsystem-assigned CDSs | 3,342 (100.00) | 3,324 (100.00) | 3,288 (100.00) |