Skip to main content

Table 2 Number of the subsystem-assigned CDSs

From: Genome sequences of the Shiga-like toxin-producing Escherichia coli NCCP15655 and NCCP15656

  NCCP15655 NCCP15656 E24377A
Carbohydrates 514 (15.38) 514 (15.46) 547 (16.64)
Clustering-based subsystems 299 (8.95) 295 (8.87) 274 (8.33)
Amino acids and derivatives 251 (7.51) 248 (7.46) 250 (7.60)
Cell wall and capsule 215 (6.43) 213 (6.41) 231 (7.03)
Phages, prophages, transposable elements, plasmids 120 (3.59) 117 (3.52) 69 (2.10)
Virulence, disease and defense 164 (4.91) 163 (4.90) 132 (4.01)
Membrane transport 194 (5.80) 193 (5.81) 197 (5.99)
Protein metabolism 181 (5.42) 182 (5.48) 188 (5.72)
Cofactors, vitamins, prosthetic groups, pigments 174 (5.21) 173 (5.20) 191 (5.81)
Stress response 175 (5.24) 175 (5.26) 174 (5.29)
DNA metabolism 131 (3.92) 129 (3.88) 144 (4.38)
Respiration 142 (4.25) 142 (4.27) 127 (3.86)
Nucleosides and nucleotides 112 (3.35) 112 (3.37) 107 (3.25)
Regulation and cell signaling 99 (2.96) 99 (2.98) 114 (3.47)
RNA metabolism 103 (3.08) 102 (3.07) 105 (3.19)
Motility and chemotaxis 89 (2.66) 89 (2.68) 61 (1.86)
Nitrogen metabolism 60 (1.80) 60 (1.81) 62 (1.89)
Fatty acids, lipids, and isoprenoids 58 (1.74) 58 (1.74) 63 (1.92)
Miscellaneous 51 (1.53) 51 (1.53) 50 (1.52)
Metabolism of aromatic compounds 42 (1.26) 42 (1.26) 33 (1.00)
Phosphorus metabolism 38 (1.14) 38 (1.14) 39 (1.19)
Cell division and cell cycle 32 (0.96) 32 (0.96) 36 (1.09)
Iron acquisition and metabolism 31 (0.93) 31 (0.93) 30 (0.91)
Sulfur metabolism 28 (0.84) 27 (0.81) 26 (0.79)
Potassium metabolism 24 (0.72) 24 (0.72) 24 (0.73)
Secondary metabolism 11 (0.33) 11 (0.33) 11 (0.33)
Dormancy and sporulation 4 (0.12) 4 (0.12) 3 (0.09)
Subsystem-assigned CDSs 3,342 (100.00) 3,324 (100.00) 3,288 (100.00)
  1. Numbers in parentheses indicate the percentage of the subsystem-assigned CDSs.