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Table 5 Summary of next generation sequencing results

From: The isolation and molecular characterization of Mycobacterium avium subsp. paratuberculosis in Shandong province, China

Parameters 0908 1026
Genome size (bp) 4,750,273 4,727,050
% G + C 69.3 % 69.3 %
Sequencing depth (X) 210 150
Mean paried read distance 438 459
No. of indels against K-10 84 96
No. of SNPs againt K-10 292 296
No. of indels against s397 338 390
No. of SNPs againt s397 3681 3705
No. of indels against s5 622 847
No. of SNPs againt s5 1016 984
% Homology to K-10 99.89 99.86
% Homology to s397 99.75 99.76
% Homology to s5 99.87 99.85