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Table 5 Summary of next generation sequencing results

From: The isolation and molecular characterization of Mycobacterium avium subsp. paratuberculosis in Shandong province, China

Parameters

0908

1026

Genome size (bp)

4,750,273

4,727,050

% G + C

69.3 %

69.3 %

Sequencing depth (X)

210

150

Mean paried read distance

438

459

No. of indels against K-10

84

96

No. of SNPs againt K-10

292

296

No. of indels against s397

338

390

No. of SNPs againt s397

3681

3705

No. of indels against s5

622

847

No. of SNPs againt s5

1016

984

% Homology to K-10

99.89

99.86

% Homology to s397

99.75

99.76

% Homology to s5

99.87

99.85