Table 1 Characteristics of the eight VNTRs observed in the 103 S. Typhi strains
From: Genotyping of Salmonella Typhi using 8-loci multi locus VNTR analysis
VNTR name | Consensus | No. of alleles | Range of no. of repeats | PCR product size range (bp) | D values |
|---|---|---|---|---|---|
Sal02 | TACCAG | 21 | 6–27 | 125–251 | 0.925 |
Sal06 | CTCAAT | 4 | 4–7 | 168–186 | 0.416 |
Sal11(TR1) | AGAAGAA | 17 | 5–20, 30 | 190–365 | 0.902 |
Sal16 | ACCATG | 13 | 10– 19, 22, 24, 26 | 200–296 | 0.909 |
Sal20 | CAG | 9 | 9, 13–20 | 172–205 | 0.795 |
Sal22 | CGTCACG | 3 | 3– 5 | 163–187 | 0.182 |
TR4699 | TGTTGG | 21 | 7, 9–22, 24–26, 28, 30, 31 | 169–313 | 0.925 |
TR2 | CCAGTTCC | 34 | 4–28, 30–32, 35, 36, 38, 40, 42, 46 | 297–633 | 0.965 |