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Table 2 Mean alpha diversity parameters in gut microbiome of HGM colonized Gn pigs

From: Modeling human enteric dysbiosis and rotavirus immunity in gnotobiotic pigs

HHGM Comparison between time points Comparison between groups
PID28 PCD7 p** PID28 HHGM UHGM p
Shannon index 2.366 1.236 0.009 Shannon index 2.366 2.743 0.006
Phylogenetic diversity 6.806 6.108 0.016 Phylogenetic diversity 6.806 6.580 0.855
Observed species 92.460 65.180 0.009 Observed species 92.460 90.550 0.855
Chao 1 168.399 125.946 0.009 Chao 1 168.399 189.092 0.201
UHGM Comparison between time points Comparison between groups
PID28 PCD7 p PCD7 HHGM UHGM p
Shannon index 2.743 2.780 0.749 Shannon index 1.236 2.780 0.006
Phylogenetic diversity 6.580 6.988 0.262 Phylogenetic diversity 6.108 6.988 0.045
Observed species 90.550 102.583 0.173 Observed species 65.180 102.583 0.006
Chao 1 189.092 206.175 0.631 Chao 1 125.946 206.175 0.006
  1. ** Kruskal–Wallis rank sum test was used for comparisons. p < 0.05 is considered significant